Mir-193-P2b

MirGeneDB ID

Rno-Mir-193-P2b

Family name

MIR-193 (all species)

Seed

AAUGCCC

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-365

Paralogues

Rno-Mir-193-P1a Rno-Mir-193-P1b Rno-Mir-193-P2a

Orthologues

Aca-Mir-193-P2b Ami-Mir-193-P2b Bge-Mir-193-P2 Bta-Mir-193-P2b Cbr-Mir-193-P2-v1 Cbr-Mir-193-P2-v2 Cel-Mir-193-P2-v1 Cel-Mir-193-P2-v2 Cfa-Mir-193-P2b Cja-Mir-193-P2b Cli-Mir-193-P2b Cmi-Mir-193-P2b Cpi-Mir-193-P2b Cpo-Mir-193-P2b Cte-Mir-193-P2 Dgr-Mir-193-P2 Dlo-Mir-193-P2 Dno-Mir-193-P2b Dre-Mir-193-P2b1 Dre-Mir-193-P2b2 Ebu-Mir-193-P2 Eca-Mir-193-P2b Ete-Mir-193-P2b Gga-Mir-193-P2b Gja-Mir-193-P2b Gmo-Mir-193-P2b2 Hme-Mir-193-P2 Hru-Mir-193-P2 Hsa-Mir-193-P2b Laf-Mir-193-P2b Lch-Mir-193-P2b Lgi-Mir-193-P2 Llo-Mir-193-P2-v1 Llo-Mir-193-P2-v2 Loc-Mir-193-P2b Mal-Mir-193-P2b2 Mgi-Mir-193-P2 Mml-Mir-193-P2b Mmr-Mir-193-P2b Mmu-Mir-193-P2b Mun-Mir-193-P2b Neu-Mir-193-P2b Oan-Mir-193-P2b Ocu-Mir-193-P2b Pab-Mir-193-P2b Pau-Mir-193-P2 Pbv-Mir-193-P2b Pdu-Mir-193-P2 Pfl-Mir-193-P2 Pma-Mir-193-P2 Pmi-Mir-193-P2 Pve-Mir-193-P2 Rph-Mir-193-P2 Sha-Mir-193-P2b Sko-Mir-193-P2 Snu-Mir-193-P2 Spt-Mir-193-P2b Spu-Mir-193-P2 Sro-Mir-193-P2 Sto-Mir-193-P2b Tca-Mir-193-P2 Tgu-Mir-193-P2b Tni-Mir-193-P2b2 Xbo-Mir-193-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr10: 67079810-67079871 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-193-P2b)

Mir-193-P1b chr10: 67065915-67065970 [+] UCSC Ensembl
Mir-193-P2b chr10: 67079810-67079871 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGAGCAUUCGAGGACAGCAAGAAAAAUGAGGGACUUUCAGGGGCAGCUGUGUUUCCUGACUCAGUCAUAAUGCCCCUAAAAAUCCUUAUUGUUCUUGCAGUGUGCAUCGGGGCAGCCAU

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGGAGAGCAUUCGAGGACA--|      A        AC   C       GC    UUUCCU 
                     GCAAGAA AAUGAGGG  UUU AGGGGCA  UGUG      G
                     CGUUCUU UUAUUCCU  AAA UCCCCGU  AUAC      A
UACCGACGGGGCUACGUGUGA^      G        AA   -       A-    UGACUC 
120       110       100        90         80         70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut +1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-193-P2b_5p*

mirBase accession

MIMAT0017184

Sequence

0- GAGGGACUUUCAGGGGCAGCUGUG -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-365-5p
miRDB: MIMAT0017184

Mature sequence

Rno-Mir-193-P2b_3p

mirBase accession

MIMAT0001549

Sequence

40- UAAUGCCCCUAAAAAUCCUUAU -62

Get sequence

Proposed targets

microrna.org: MIMAT0001549
TargetScanVert: rno-miR-365-3p
miRDB: MIMAT0001549