MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-193-P1o

Family name MIR-193 (all species)
Seed ACUGGCC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-193-P1n  Efe-Mir-193-P2c-v1  Efe-Mir-193-P2c-v2  Efe-Mir-193-P2d-v1  Efe-Mir-193-P2d-v2  Efe-Mir-193-P2e-v1  Efe-Mir-193-P2e-v2  Efe-Mir-193-P2f-v1  Efe-Mir-193-P2f-v2 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Bfl-Mir-193-P1o1a  Bfl-Mir-193-P1o1b  Bfl-Mir-193-P1o2  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Eba-Mir-193-P1  Esc-Mir-193-P1  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mgi-Mir-193-P1  Mom-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pau-Mir-193-P1  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rph-Mir-193-P1  Snu-Mir-193-P1  Tca-Mir-193-P1  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)		 Efet.01.135638: 1821-1882 [-]
Precursor
(pre-Mir +30nt flank)
UGCAGAUUGAAACCUUUGCAAUGCCCUCUGUAGGACUAUACGGUCCUUUCGGAUAUAUUUUCACUAGCUCCACUGGCCCGUAUAGUUUUACUGGGAGCUGCUGAAAAUCUCCUCCAACANNN
Get precursor sequence
Structure
        10            20        30        40        50        60 
UGCAGAUUGAAACCUUU----|  AU  C   U              U  UUUC   UAUAUUU 
                     GCA  GC CUC GUAGGACUAUACGG CC    GGA       \
                     CGU  CG GGG CAUUUUGAUAUGCC GG    CCU       U
NNNACAACCUCCUCUAAAAGU^  --  A   U              C  UCA-   CGAUCAC 
120       110       100          90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-193-P1o_5p*
mirBase accessionNone
Sequence 
0- UAGGACUAUACGGUCCUUUCGGA -23
Get sequence
Mature sequence

Efe-Mir-193-P1o_3p
mirBase accessionNone
Sequence 
40- CACUGGCCCGUAUAGUUUUACU -62
Get sequence