MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-193-P1o1a

Family name MIR-193 (all species)
Seed ACUGGCU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-193-P1e  Bfl-Mir-193-P1j  Bfl-Mir-193-P1k  Bfl-Mir-193-P1o1b  Bfl-Mir-193-P1o2 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Bge-Mir-193-P1  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Eba-Mir-193-P1  Efe-Mir-193-P1o  Esc-Mir-193-P1  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mgi-Mir-193-P1  Mom-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pau-Mir-193-P1  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rph-Mir-193-P1  Snu-Mir-193-P1  Tca-Mir-193-P1  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) B. floridae
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049982.1: 12290547-12290605 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCACCACGCCGACACCACCACCAUGCCGGUCGGGACUUGGCGGACCAGACGGUUCUUUAUUGUGUCCUACUGGCUCGCCAAGUCCUAGUCGGCUGCGGUGAGAAACGCCUGUCGAUCCC
Get precursor sequence
Structure
        10         20         30        40        50         
CCACCACGCCGACACCAC-    AU-|    UC           GA    AC  UUCUUU 
                   CACC   GCCGG  GGGACUUGGCG  CCAG  GG      \
                   GUGG   CGGCU  UCCUGAACCGC  GGUC  CC      A
CCCUAGCUGUCCGCAAAGA    CGU^    GA           UC    AU  UGUGUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-193-P1o1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGGGACUUGGCGGACCAGACGG -22
Get sequence
Mature sequence

Bfl-Mir-193-P1o1a_3p (predicted)
mirBase accessionNone
Sequence 
37- UACUGGCUCGCCAAGUCCUAGU -59
Get sequence