MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-193-P1e

Family name MIR-193 (all species)
Seed ACUGGCC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-193a
Paralogues Bfl-Mir-193-P1j  Bfl-Mir-193-P1k  Bfl-Mir-193-P1o1a  Bfl-Mir-193-P1o1b  Bfl-Mir-193-P1o2 
Orthologues Aae-Mir-193-P1  Aga-Mir-193-P1  Bge-Mir-193-P1  Bla-Mir-193-P1e  Cbr-Mir-193-P1-v1  Cbr-Mir-193-P1-v2  Cel-Mir-193-P1-v1  Cel-Mir-193-P1-v2  Cte-Mir-193-P1  Dan-Mir-193-P1-v1  Dan-Mir-193-P1-v2  Dan-Mir-193-P1-v3  Dan-Mir-193-P1-v4  Dgr-Mir-193-P1  Dlo-Mir-193-P1  Dma-Mir-193-P1  Dme-Mir-193-P1-v1  Dme-Mir-193-P1-v2  Dme-Mir-193-P1-v3  Dme-Mir-193-P1-v4  Dmo-Mir-193-P1-v1  Dmo-Mir-193-P1-v2  Dmo-Mir-193-P1-v3  Dmo-Mir-193-P1-v4  Dpu-Mir-193-P1  Dsi-Mir-193-P1-v1  Dsi-Mir-193-P1-v2  Dsi-Mir-193-P1-v3  Dsi-Mir-193-P1-v4  Dya-Mir-193-P1-v1  Dya-Mir-193-P1-v2  Dya-Mir-193-P1-v3  Dya-Mir-193-P1-v4  Eba-Mir-193-P1  Esc-Mir-193-P1  Gpa-Mir-193-P1  Hme-Mir-193-P1  Hru-Mir-193-P1  Isc-Mir-193-P1  Lgi-Mir-193-P1  Lhy-Mir-193-P1  Mgi-Mir-193-P1  Mom-Mir-193-P1  Npo-Mir-193-P1  Obi-Mir-193-P1  Ofu-Mir-193-P1  Ovu-Mir-193-P1  Pau-Mir-193-P1  Pcr-Mir-193-P1  Pma-Mir-193-P1  Pmi-Mir-193-P1  Pve-Mir-193-P1  Rph-Mir-193-P1  Snu-Mir-193-P1  Tca-Mir-193-P1  War-Mir-193-P1  Xbo-Mir-193-P1 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049981.1: 21537097-21537155 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAACUUAGUCAGACAGCACGCAUGCUCAAUAAAGACUUCAGGGGACAGUCGGUGUCUAGCAGUUUCCUACUGGCCCCUUAAGUCCCGGUUGACGUUCGUGAAUCGGUCAAGCGUACCUC
Get precursor sequence
Structure
        10           20        30        40        50         
GAACUUAGUCAGACAGC---|  C   C     AAA     C     A    C  UGUCUA 
                    ACG AUG UCAAU   GACUU AGGGG CAGU GG      \
                    UGC UGC AGUUG   CUGAA UCCCC GUCA CC      G
CUCCAUGCGAACUGGCUAAG^  U   -     GCC     U     G    U  UUUGAC 
       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Bfl-Mir-193-P1e_5p* (predicted)
mirBase accessionNone
Sequence 
0- AAAGACUUCAGGGGACAGUCGG -22
Get sequence
Mature sequence

Bfl-Mir-193-P1e_3p (predicted)
mirBase accessionMIMAT0009490
Sequence 
37- UACUGGCCCCUUAAGUCCCGGU -59
Get sequence