Mir-193-P1b

MirGeneDB ID

Cmi-Mir-193-P1b

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-193-P1a Cmi-Mir-193-P2a Cmi-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635919.1: 3043759-3043816 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCGAAUGAUGGGUACAGUGGGUUUGAGACUGGGUCUUUGUGAGCAAGAUGUCACAAAGUUGCACCAACUGGCCUGCAAAGUCCCAGUUUUAAUCUUGCAUUAUUUGCUGCCUGCUCU

Get precursor sequence

Structure

        10          20        30        40        50        
ACCGAAUGAUGGGUACA--|UG  U           U      GA  A  A  UCACAA 
                   G  GG UUGAGACUGGG CUUUGU  GC AG UG      A
                   C  UC AAUUUUGACCC GAAACG  CG UC AC      G
UCUCGUCCGUCGUUUAUUA^GU  U           U      UC  G  A  CACGUU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-193-P1b_5p*

mirBase accession

None

Sequence

0- UGGGUCUUUGUGAGCAAGAUGU -22

Get sequence

Mature sequence

Cmi-Mir-193-P1b_3p

mirBase accession

None

Sequence

36- AACUGGCCUGCAAAGUCCCAGU -58

Get sequence