Mir-193-P1b

MirGeneDB ID

Cmi-Mir-193-P1b

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-193-P1a Cmi-Mir-193-P2a Cmi-Mir-193-P2b

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cgi-Mir-193-P1 Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Hme-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Lch-Mir-193-P1b Lgi-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mal-Mir-193-P1b2 Mdo-Mir-193-P1b Mml-Mir-193-P1b Mmu-Mir-193-P1b Mun-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ovu-Mir-193-P1 Pbv-Mir-193-P1b Pma-Mir-193-P1 Pmi-Mir-193-P1 Rno-Mir-193-P1b Sha-Mir-193-P1b Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 Xbo-Mir-193-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635919.1: 3043759-3043816 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCGAAUGAUGGGUACAGUGGGUUUGAGACUGGGUCUUUGUGAGCAAGAUGUCACAAAGUUGCACCAACUGGCCUGCAAAGUCCCAGUUUUAAUCUUGCAUUAUUUGCUGCCUGCUCU

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Structure

        10          20        30        40        50        
ACCGAAUGAUGGGUACA--|UG  U           U      GA  A  A  UCACAA 
                   G  GG UUGAGACUGGG CUUUGU  GC AG UG      A
                   C  UC AAUUUUGACCC GAAACG  CG UC AC      G
UCUCGUCCGUCGUUUAUUA^GU  U           U      UC  G  A  CACGUU 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-193-P1b_5p*

mirBase accession

None

Sequence

0- UGGGUCUUUGUGAGCAAGAUGU -22

Get sequence

Mature sequence

Cmi-Mir-193-P1b_3p

mirBase accession

None

Sequence

36- AACUGGCCUGCAAAGUCCCAGU -58

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