Mir-193-P1b2

MirGeneDB ID

Mal-Mir-193-P1b2

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-193-P2b2

Orthologues

Aae-Mir-193-P1 Aca-Mir-193-P1b Aga-Mir-193-P1 Ami-Mir-193-P1b Bge-Mir-193-P1 Bta-Mir-193-P1b Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cfa-Mir-193-P1b Cja-Mir-193-P1b Cmi-Mir-193-P1b Cpi-Mir-193-P1b Cpo-Mir-193-P1b Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dno-Mir-193-P1b Dpu-Mir-193-P1 Dre-Mir-193-P1b2 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Eca-Mir-193-P1b Esc-Mir-193-P1 Ete-Mir-193-P1b Gga-Mir-193-P1b Gja-Mir-193-P1b Gmo-Mir-193-P1b2 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Hsa-Mir-193-P1b Isc-Mir-193-P1 Laf-Mir-193-P1b Lch-Mir-193-P1b Lgi-Mir-193-P1 Lhy-Mir-193-P1 Loc-Mir-193-P1b Loc-Mir-193-P1b-as Mdo-Mir-193-P1b Mgi-Mir-193-P1 Mml-Mir-193-P1b Mmr-Mir-193-P1b Mmu-Mir-193-P1b Mom-Mir-193-P1 Mun-Mir-193-P1b Neu-Mir-193-P1b Npo-Mir-193-P1 Oan-Mir-193-P1b Obi-Mir-193-P1 Ocu-Mir-193-P1b Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pab-Mir-193-P1b Pau-Mir-193-P1 Pbv-Mir-193-P1b Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rno-Mir-193-P1b Rph-Mir-193-P1 Sha-Mir-193-P1b Snu-Mir-193-P1 Spt-Mir-193-P1b Sto-Mir-193-P1b Tca-Mir-193-P1 Tgu-Mir-193-P1b Tni-Mir-193-P1b2 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884720.1: 399758-399816 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGAUGAUGAUGAUGGUGUGUGUCUGAGGCUGGGUCUUUGCGGGCAAGGUGAGUCCUCAGUUAAUUCAACUGGCCUACAAAGUCCCAGUUUCUGGCUCAUGUGACCACCAAGUAAUUGA

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Structure

        10          20        30        40        50         
AUGAUGAUGAUGAUGGU--|  U   U         U     CG   A  G   GUCCUC 
                   GUG GUC GAGGCUGGG CUUUG  GGC AG UGA      \
                   UAC CGG CUUUGACCC GAAAC  CCG UC ACU      A
AGUUAAUGAACCACCAGUG^  U   U         U     AU   G  A   UAAUUG 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-193-P1b2_5p*

mirBase accession

None

Sequence

0- UGGGUCUUUGCGGGCAAGGUGA -22

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Mature sequence

Mal-Mir-193-P1b2_3p

mirBase accession

None

Sequence

37- AACUGGCCUACAAAGUCCCAGU -59

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