Mir-193-P1j1

MirGeneDB ID

Bla-Mir-193-P1j1

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-193-P1e Bla-Mir-193-P1f1 Bla-Mir-193-P1f2 Bla-Mir-193-P1g1 Bla-Mir-193-P1g2 Bla-Mir-193-P1h1 Bla-Mir-193-P1h2 Bla-Mir-193-P1i1 Bla-Mir-193-P1i2 Bla-Mir-193-P1j2 Bla-Mir-193-P1k

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bfl-Mir-193-P1j Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

B. lanceolatum

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000154: 658502-658559 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAAUGCCGCAUGAUGCCCACUGUGGUCAGUCUGGACCUCGCGGAACAGUCGGUUUGUACCAGAUCCUACUGGCCCGCCAAGUCCUGAUCGACUGUAUGUGACUUACACUAAGUUACAG

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Structure

        10         20         30        40        50        
CAAUGCCGCAUGAUGCC-   -| UG   A   U    CUC    AA    C  UUUGU 
                  CAC UG  GUC GUC GGAC   GCGG  CAGU GG     A
                  GUG AU  CAG UAG CCUG   CGCC  GUCA CC     C
GACAUUGAAUCACAUUCA   U^ GU   C   U    AAC    CG    U  UAGAC 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-193-P1j1_5p*

mirBase accession

None

Sequence

0- CUGGACCUCGCGGAACAGUCGG -22

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Mature sequence

Bla-Mir-193-P1j1_3p

mirBase accession

None

Sequence

36- UACUGGCCCGCCAAGUCCUGAU -58

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