Mir-193-P1m

MirGeneDB ID

Agr-Mir-193-P1m

Family name

MIR-193 (all species)

Seed

ACUGGCC

Species

West Indian fuzzy chiton (Acanthopleura granulata )

MiRBase ID

Paralogues

Agr-Mir-193-P1l

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cbr-Mir-193-P1-v2 Cel-Mir-193-P1-v1 Cel-Mir-193-P1-v2 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dan-Mir-193-P1-v2 Dan-Mir-193-P1-v3 Dan-Mir-193-P1-v4 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dme-Mir-193-P1-v2 Dme-Mir-193-P1-v3 Dme-Mir-193-P1-v4 Dmo-Mir-193-P1-v1 Dmo-Mir-193-P1-v2 Dmo-Mir-193-P1-v3 Dmo-Mir-193-P1-v4 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dsi-Mir-193-P1-v2 Dsi-Mir-193-P1-v3 Dsi-Mir-193-P1-v4 Dya-Mir-193-P1-v1 Dya-Mir-193-P1-v2 Dya-Mir-193-P1-v3 Dya-Mir-193-P1-v4 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)

JABBOT010000002.1: 38401352-38401407 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUGGGUUAGACAUGUUUGGUUUCAUCAGGGGUUUUGCUCGCCAUGCAUGCAGCUACAACCGUCAUACUGGCCUGCAAAAUCCCUAAAGAGCUAUUCAUUGCUGCGUUCUGUACU

Get precursor sequence

Structure

        10           20        30        40        50       
UGCUGGGUUAGACAUGUU---|     CAUC           UC    UGCAUGCAGCU 
                     UGGUUU    AGGGGUUUUGC  GCCA           A
                     AUCGAG    UCCCUAAAACG  CGGU           C
UCAUGUCUUGCGUCGUUACUU^     AAA-           UC    CAUACUGCCAA 
    110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Le

Star sequence

Agr-Mir-193-P1m_5p* (predicted)

mirBase accession

None

Sequence

0- GGGUUUUGCUCGCCAUGCAU -20

Get sequence

Mature sequence

Agr-Mir-193-P1m_3p

mirBase accession

None

Sequence

36- UACUGGCCUGCAAAAUCCCU -56

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