| MirGeneDB ID | Lgi-Mir-2-o15 |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Owl limpet (Lottia gigantea) |
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| MiRBase ID |
lgi-mir-2c
|
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| Paralogues |
Lgi-Mir-2-o14
Lgi-Mir-2-o16
Lgi-Mir-2-o17
Lgi-Mir-2-o18
Lgi-Mir-2-o19
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
L. gigantea
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Lotgi1) |
LOTGIsca_2: 5780837-5780893 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CAAUGGACAUUACCGGUAUUUAUGGAGAUCCCAUUAAAGUGGUUGUGAUGUGUUAAAUUCAUCAUAUCACAGCCAGCUUUGAUGAGUUCUUUAUAAACAAAAUCAGCUAAGAAAUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAUGGACAUUACCGGUA-- UCC -| UUAA
UUUAUGGAGA CAUUAAAG UGGUUGUGAUGUG A
AAAUAUUUCU GUAGUUUC ACCGACACUAUAC U
CGUAAAGAAUCGACUAAAAC UGA G^ UACU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lgi-Mir-2-o15_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCAUUAAAGUGGUUGUGAUGUG -22
Get sequence
|
|---|
| Mature sequence |
Lgi-Mir-2-o15_3p |
| mirBase accession | MIMAT0009558 |
|---|
| Sequence |
34- UAUCACAGCCAGCUUUGAUGAGU -57
Get sequence
|
|---|
