| MirGeneDB ID | Loc-Mir-722-v1 |
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| Family name |
MIR-722 (all species) |
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| Seed |
UUUGCAG |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-722-v2
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| Orthologues |
Lch-Mir-722
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| Node of Origin (locus) |
Osteichthyes
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| Node of Origin (family) |
Osteichthyes
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Genome context
(LepOcu1) |
LG10: 41985440-41985504 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUUUGCCAAGAGACUGGAACAGAAUGGAAUUUGAAACGUUUUAGCCAAAAAUGUUUCCAUGGUAAAGGUGUUUUUUGCAGAAACGUUUCAGAUUUCGUUCCGUUCUCCAACUUCGGCCCGGAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCUUUGCCAAGAGACUG--| A A C UGUUUCCAU
GAAC GAAUGGAAUUUGAAACGUUUU GC AAAAA \
CUUG CUUGCUUUAGACUUUGCAAAG CG UUUUU G
CAAGGCCCGGCUUCAACCU^ C A U GUGGAAAUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-722-v1_5p* |
| mirBase accession | None |
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| Sequence |
0- UUUGAAACGUUUUAGCCAAAAA -22
Get sequence
|
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| Mature sequence |
Loc-Mir-722-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUUUGCAGAAACGUUUCAGAUU -65
Get sequence
|
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