MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-153-P13

Family name MIR-153 (all species)
Seed UGCAUAG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-153-P10  Lpo-Mir-153-P11  Lpo-Mir-153-P12  Lpo-Mir-153-P14  Lpo-Mir-153-P15 
Orthologues Asu-Mir-153  Bfl-Mir-153  Bla-Mir-153  Bpl-Mir-153  Cgi-Mir-153  Cin-Mir-153  Cte-Mir-153  Dma-Mir-153  Dpu-Mir-153  Isc-Mir-153  Lan-Mir-153  Lgi-Mir-153  Npo-Mir-153  Obi-Mir-153  Ovu-Mir-153  Pfl-Mir-153  Pmi-Mir-153  Sko-Mir-153  Sme-Mir-153  Spu-Mir-153  Xbo-Mir-153 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013679800.1: 7240-7296 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUCCAACUAACCAACCUUAAUCGUCCAUCAUUUUUGUGUUUGGUGCAAUUUUGUUGACAUAAUUGCAUAGUCACAAAAGUGAUGGAUGGUGAAGGGACAACCCACCUUCCUGCU
Get precursor sequence
Structure
        10          20        30        40        50        
CAUCUCCAACUAACCAA--|   A                   UUUG        UUGU 
                   CCUU AUCGUCCAUCAUUUUUGUG    GUGCAAUU    U
                   GGAA UGGUAGGUAGUGAAAACAC    UACGUUAA    G
UCGUCCUUCCACCCAACAG^   G                   UGA-        UACA 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-153-P13_5p*
mirBase accessionNone
Sequence 
0- UCAUUUUUGUGUUUGGUGCAAUU -23
Get sequence
Mature sequence

Lpo-Mir-153-P13_3p
mirBase accessionNone
Sequence 
35- UUGCAUAGUCACAAAAGUGAUG -57
Get sequence