MirGeneDB ID | Lpo-Mir-153-P13 |
Family name |
MIR-153 (all species) |
Seed |
UGCAUAG |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-153-P10
Lpo-Mir-153-P11
Lpo-Mir-153-P12
Lpo-Mir-153-P14
Lpo-Mir-153-P15
|
Orthologues |
Agr-Mir-153
Asu-Mir-153
Bfl-Mir-153
Bko-Mir-153
Bla-Mir-153
Bpl-Mir-153
Cin-Mir-153
Cte-Mir-153
Dgr-Mir-153
Dma-Mir-153
Dpu-Mir-153
Eba-Mir-153
Egr-Mir-153
Gsa-Mir-153
Gsp-Mir-153
Hmi-Mir-153
Hru-Mir-153
Isc-Mir-153
Lan-Mir-153
Lgi-Mir-153
Llo-Mir-153
Mgi-Mir-153
Mom-Mir-153
Npo-Mir-153
Obi-Mir-153
Ofu-Mir-153
Ovu-Mir-153
Pau-Mir-153
Pca-Mir-153
Pcr-Mir-153
Pdu-Mir-153
Pfl-Mir-153
Pmi-Mir-153
Pve-Mir-153
Rph-Mir-153
Sko-Mir-153
Sme-Mir-153
Snu-Mir-153
Spu-Mir-153
Tur-Mir-153
War-Mir-153
Xbo-Mir-153
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013679800.1: 7240-7296 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAUCUCCAACUAACCAACCUUAAUCGUCCAUCAUUUUUGUGUUUGGUGCAAUUUUGUUGACAUAAUUGCAUAGUCACAAAAGUGAUGGAUGGUGAAGGGACAACCCACCUUCCUGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUCUCCAACUAACCAA--| A UUUG UUGU
CCUU AUCGUCCAUCAUUUUUGUG GUGCAAUU U
GGAA UGGUAGGUAGUGAAAACAC UACGUUAA G
UCGUCCUUCCACCCAACAG^ G UGA- UACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Lpo-Mir-153-P13_5p* |
mirBase accession | None |
Sequence |
0- UCAUUUUUGUGUUUGGUGCAAUU -23
Get sequence
|
Mature sequence |
Lpo-Mir-153-P13_3p |
mirBase accession | None |
Sequence |
35- UUGCAUAGUCACAAAAGUGAUG -57
Get sequence
|