Mir-7371-P1

MirGeneDB ID

Mdo-Mir-7371-P1

Family name

MIR-7371 (all species)

Seed

UAGAGCA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7371a

Paralogues

Mdo-Mir-7371-P2a Mdo-Mir-7371-P2b Mdo-Mir-7371-P3 Mdo-Mir-7371-P4 Mdo-Mir-7371-P5 Mdo-Mir-7371-P6 Mdo-Mir-7371-P7 Mdo-Mir-7371-P8-v1 Mdo-Mir-7371-P8-v2 Mdo-Mir-7371-P9 Mdo-Mir-7371-P10 Mdo-Mir-7371-P11a Mdo-Mir-7371-P11b Mdo-Mir-7371-P11c Mdo-Mir-7371-P12 Mdo-Mir-7371-P13 Mdo-Mir-7371-P14 Mdo-Mir-7371-P15 Mdo-Mir-7371-P16 Mdo-Mir-7371-P17 Mdo-Mir-7371-P18 Mdo-Mir-7371-P19-v1 Mdo-Mir-7371-P19-v2 Mdo-Mir-7371-P20 Mdo-Mir-7371-P21 Mdo-Mir-7371-P22 Mdo-Mir-7371-P23 Mdo-Mir-7371-P24 Mdo-Mir-7371-P25 Mdo-Mir-7371-P26 Mdo-Mir-7371-P27 Mdo-Mir-7371-P28a Mdo-Mir-7371-P28b Mdo-Mir-7371-P30 Mdo-Mir-7371-P31 Mdo-Mir-7371-P32 Mdo-Mir-7371-P33 Mdo-Mir-7371-P34 Mdo-Mir-7371-P35 Mdo-Mir-7371-P36 Mdo-Mir-7371-P37 Mdo-Mir-7371-P38 Mdo-Mir-7371-P39

Orthologues

Sha-Mir-7371-o1

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 38895437-38895494 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7371-P1)

Mir-7370 X: 38866830-38866888 [-] UCSC Ensembl
Mir-7371-P1 X: 38895437-38895494 [-] UCSC Ensembl
Mir-7371-P2a X: 38896648-38896704 [-] UCSC Ensembl
Mir-7371-P3 X: 38897274-38897334 [-] UCSC Ensembl
Mir-7371-P4 X: 38897921-38897979 [-] UCSC Ensembl
Mir-7371-P5 X: 38898553-38898610 [-] UCSC Ensembl
Mir-7371-P6 X: 38899297-38899358 [-] UCSC Ensembl
Mir-7371-P7 X: 38901020-38901081 [-] UCSC Ensembl
Mir-7371-P8-v1 X: 38901553-38901612 [-] UCSC Ensembl
Mir-7371-P8-v2 X: 38901553-38901612 [-] UCSC Ensembl
Mir-7371-P2b X: 38902124-38902180 [-] UCSC Ensembl
Mir-7371-P9 X: 38902981-38903043 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUCUCCUGCCAUAUCCUCCACUUGCUUCCUUUGUACAAGAUGCUCUGUUUUGUAAAUAUCAUCAAAUAGAGCAUACUUGUGCAAAGGAAGUUAUUGGAGGUACAACUCUACCUUGAA

Get precursor sequence

Structure

        10          20        30        40         50        
ACUCUCCUGCCAUAUCC--    CUU                -|          UGUAAA 
                   UCCA   GCUUCCUUUGUACAAG AUGCUCUGUUU      \
                   AGGU   UGAAGGAAACGUGUUC UACGAGAUAAA      U
AAGUUCCAUCUCAACAUGG    UAU                A^          CUACUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

There are Drosha cuts -1 -2 and -3.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-7371-P1_5p*

mirBase accession

MIMAT0028772

Sequence

0- UUUGUACAAGAUGCUCUGUUU -21

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7371a-5p

Mature sequence

Mdo-Mir-7371-P1_3p

mirBase accession

MIMAT0028773

Sequence

36- AUAGAGCAUACUUGUGCAAAGG -58

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7371a-3p