Mir-7398-P5c

MirGeneDB ID

Mdo-Mir-7398-P5c

Family name

MIR-7398 (all species)

Seed

GUGUGGA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7398k-2

Paralogues

Mdo-Mir-7398-P1 Mdo-Mir-7398-P2 Mdo-Mir-7398-P3 Mdo-Mir-7398-P4 Mdo-Mir-7398-P5a Mdo-Mir-7398-P5b Mdo-Mir-7398-P5d Mdo-Mir-7398-P9a-v1 Mdo-Mir-7398-P9a-v2 Mdo-Mir-7398-P9b Mdo-Mir-7398-P11 Mdo-Mir-7398-P12 Mdo-Mir-7398-P13 Mdo-Mir-7398-P14a Mdo-Mir-7398-P14b Mdo-Mir-7398-P15 Mdo-Mir-7398-P16 Mdo-Mir-7398-P17 Mdo-Mir-7398-P18 Mdo-Mir-7398-P19 Mdo-Mir-7398-P20 Mdo-Mir-7398-P21 Mdo-Mir-7398-P22 Mdo-Mir-7398-P23a Mdo-Mir-7398-P23b Mdo-Mir-7398-P24a Mdo-Mir-7398-P24b Mdo-Mir-7398-P25 Mdo-Mir-7398-P26 Mdo-Mir-7398-P28

Orthologues

Neu-Mir-7398-P5 Sha-Mir-7398-o5

Node of Origin (locus)

M. domestica

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 57285473-57285533 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7398-P5c)

Mir-7398-P1 X: 57276306-57276364 [+] UCSC Ensembl
Mir-7398-P2 X: 57279275-57279333 [+] UCSC Ensembl
Mir-7398-P3 X: 57282764-57282822 [+] UCSC Ensembl
Mir-7398-P4 X: 57283471-57283530 [+] UCSC Ensembl
Mir-7398-P5a X: 57284128-57284188 [+] UCSC Ensembl
Mir-7398-P5b X: 57284809-57284869 [+] UCSC Ensembl
Mir-7398-P5c X: 57285473-57285533 [+] UCSC Ensembl
Mir-7398-P5d X: 57286131-57286191 [+] UCSC Ensembl
Mir-7398-P9a-v2 X: 57286820-57286880 [+] UCSC Ensembl
Mir-7398-P9a-v1 X: 57286821-57286879 [+] UCSC Ensembl
Mir-7398-P9b X: 57287463-57287521 [+] UCSC Ensembl
Mir-7398-P11 X: 57288057-57288117 [+] UCSC Ensembl
Mir-7398-P12 X: 57288723-57288783 [+] UCSC Ensembl
Mir-7398-P13 X: 57289402-57289462 [+] UCSC Ensembl
Mir-7398-P14b X: 57291703-57291761 [+] UCSC Ensembl
Mir-7398-P15 X: 57292644-57292702 [+] UCSC Ensembl
Mir-7398-P14a X: 57293442-57293500 [+] UCSC Ensembl
Mir-7398-P16 X: 57293921-57293979 [+] UCSC Ensembl
Mir-7398-P17 X: 57294562-57294624 [+] UCSC Ensembl
Mir-7398-P18 X: 57296466-57296526 [+] UCSC Ensembl
Mir-7398-P19 X: 57297040-57297098 [+] UCSC Ensembl
Mir-7398-P20 X: 57297721-57297779 [+] UCSC Ensembl
Mir-7398-P21 X: 57298336-57298390 [+] UCSC Ensembl
Mir-7398-P22 X: 57301459-57301516 [+] UCSC Ensembl
Mir-7398-P23a X: 57306266-57306324 [+] UCSC Ensembl
Mir-7398-P24a X: 57307981-57308039 [+] UCSC Ensembl
Mir-7398-P25 X: 57311982-57312040 [+] UCSC Ensembl
Mir-7398-P26 X: 57314588-57314647 [+] UCSC Ensembl
Mir-7398-P24b X: 57315817-57315874 [+] UCSC Ensembl
Mir-7398-P28 X: 57318976-57319034 [+] UCSC Ensembl
Mir-7398-P23b X: 57321995-57322057 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUGUUCUUUGACCUCCAGGUGCCCGACUGUGUGGAGGUAAGGAACUACGUCGUGUUCUAUCUCUCGGUAAAUCCUUGCCUCUCACUGUUGAGCAUUUAGGACUCUGCGACGGUCCCCU

Get precursor sequence

Structure

        10          20        30        40        50        60
CUCCUGUUCUUUGACCU-  -|     C    U   U           AC   GUCGUGUU 
                  CC AGGUGC CGAC GUG GGAGGUAAGGA  UAC        C
                  GG UUUACG GUUG CAC UCUCCGUUCCU  AUG        U
UCCCCUGGCAGCGUCUCA  A^     A    U   -           AA   GCUCUCUA 
 .       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-7398-P5c_5p

mirBase accession

MIMAT0028906

Sequence

0- UGUGUGGAGGUAAGGAACUACGU -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7398k-5p

Star sequence

Mdo-Mir-7398-P5c_3p*

mirBase accession

MIMAT0031052

Sequence

39- GUAAAUCCUUGCCUCUCACUGU -61

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7398k-2-3p