MirGeneDB ID | Nag-Novel-1-P1 |
---|---|
Family name | NAG-NOVEL-1 (all species) |
Seed | AAGGAAU |
Species | Thorny-headed worm 1 (Neoechinorhynchus agilis) |
MiRBase ID | |
Paralogues | Nag-Novel-1-P2 Nag-Novel-1-P3 Nag-Novel-1-P4 Nag-Novel-1-P5 Nag-Novel-1-P6 Nag-Novel-1-P7 |
Orthologues | |
Node of Origin (locus) | N.agilis |
Node of Origin (family) | N.agilis |
Genome context (N_agilis_genome_min1000_bacfree) |
k149_10783: 7156-7215 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AUUGAUUCUGAAUUUUUUCAAAAGUUAAUGAAAGGAAUUUAAGAACCAAUCGAUGAAACAAAGUAUCGAUUGGUCUUAAAAUUCCUUUCAUUAAUUCCGAAUUUGUUUCCAAAUCAAUGAGet precursor sequence |
Structure | 10 20 30 40 50 AUUGAUUCUGAAUUUUU---| AAA - A AUGAAA UC AGUUAAUGAAAGGAAUUU AAGA CCAAUCG C AG UUAAUUACUUUCCUUAAA UUCU GGUUAGC A AGUAACUAAACCUUUGUUUA^ CC- A - UAUGAA . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Nag-Novel-1-P1_5p |
mirBase accession | None |
Sequence |
0- AAAGGAAUUUAAGAACCAAUCG -22
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|
Star sequence | Nag-Novel-1-P1_3p* |
mirBase accession | None |
Sequence |
38- AUUGGUCUUAAAAUUCCUUUCA -60
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|