MirGeneDB 3.0

MirGeneDB ID

Nag-Novel-1-P7

Family name NAG-NOVEL-1 (all species)
Seed AACGAAU
Species Thorny-headed worm 1 (Neoechinorhynchus agilis)
MiRBase ID
Paralogues Nag-Novel-1-P1  Nag-Novel-1-P2  Nag-Novel-1-P3  Nag-Novel-1-P4  Nag-Novel-1-P5  Nag-Novel-1-P6 
Orthologues
Node of Origin (locus) N.agilis
Node of Origin (family) N.agilis
Genome context
(N_agilis_genome_min1000_bacfree)
k149_9498: 657-716 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGAUCCUGAAUUCGUUUCCUAGUCAAUGAAACGAAUUUAAGAACUAAUCGAUGAAACAAAGUAUCGAUUGGUCUUAAAAUUCCUUUCAUUGAUUCUGAAUUUGUUUCCGAAUCAAUGA
Get precursor sequence
Structure
        10          20        30         40        50         
AUUGAUCCUGAAUUCGU--   CU           C   -|      A       AUGAAA 
                   UUC  AGUCAAUGAAA GAA UUUAAGA CUAAUCG      C
                   AAG  UUAGUUACUUU CUU AAAUUCU GGUUAGC      A
AGUAACUAAGCCUUUGUUU   UC           C   A^      -       UAUGAA 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To To
Mature sequence

Nag-Novel-1-P7_5p

mirBase accessionNone
Sequence
0- AAACGAAUUUAAGAACUAAUCG -22
Get sequence
Star sequence

Nag-Novel-1-P7_3p*

mirBase accessionNone
Sequence
38- AUUGGUCUUAAAAUUCCUUUCA -60
Get sequence