MirGeneDB 3.0
MirGeneDB ID

Nve-Mir-2042

Family name MIR-2042 (all species)
Seed UAUAAAU
Species Starlet sea anemone (Nematostella vectensis)
MiRBase ID nve-mir-2042
Paralogues
Orthologues
Node of Origin (locus) N. vectensis
Node of Origin (family) N. vectensis
Genome context
(GCF_000209225.1_ASM20922v1_NVE)		 NW_001834183.1: 5544-5593 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2042)		 Mir-2051 NW_001834183.1: 5198-5253 [-] Ensembl
Mir-2042 NW_001834183.1: 5544-5593 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGGAGAGGUAUUUACAAUGACGACACACCCUUAUAAAUCAUCCUUGCACUACUUAUGUCGUACAUUGAUGAUUUAUGAAGGUGUGUUGCUGACUCUGCUAAAACGACAAC
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Structure
        10        20          30        40        50    
CGGAGAGGUAUUUACAAUGA--|        C            CU  C  U  U 
                      CGACACACC UUAUAAAUCAUC  UG AC AC U
                      GUUGUGUGG AGUAUUUAGUAG  AC UG UG A
CAACAGCAAAAUCGUCUCAGUC^        A            UU  A  C  U 
.       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ad Bl Ju La Pr
Mature sequence

Nve-Mir-2042_5p
mirBase accessionMIMAT0009806
Sequence 
0- UUAUAAAUCAUCCUUGCACUAC -22
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Star sequence

Nve-Mir-2042_3p*
mirBase accessionMIMAT0009807
Sequence 
28- CGUACAUUGAUGAUUUAUGAAG -50
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