MirGeneDB 3.0

MirGeneDB ID

Oan-Mir-1422-P18

Family name MIR-1422 (all species)
Seed UUCAUUC
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1422l
Paralogues Oan-Mir-1422-P1  Oan-Mir-1422-P2  Oan-Mir-1422-P3  Oan-Mir-1422-P4  Oan-Mir-1422-P5  Oan-Mir-1422-P6  Oan-Mir-1422-P7  Oan-Mir-1422-P8  Oan-Mir-1422-P9  Oan-Mir-1422-P10  Oan-Mir-1422-P11  Oan-Mir-1422-P12  Oan-Mir-1422-P13  Oan-Mir-1422-P14  Oan-Mir-1422-P15  Oan-Mir-1422-P16  Oan-Mir-1422-P17 
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) O. anatinus
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041749.1: 94754440-94754500 [-]
Clustered miRNAs
(< 50kb from Mir-1422-P18)
Mir-1422-P13 NC_041749.1: 94731555-94731614 [-]
Mir-1422-P12 NC_041749.1: 94733107-94733168 [-]
Mir-1422-P1 NC_041749.1: 94735825-94735883 [-]
Mir-1422-P2 NC_041749.1: 94736816-94736874 [-]
Mir-1422-P3 NC_041749.1: 94737600-94737660 [-]
Mir-1422-P4 NC_041749.1: 94738351-94738409 [-]
Mir-1422-P5 NC_041749.1: 94739031-94739089 [-]
Mir-1422-P6 NC_041749.1: 94740235-94740295 [-]
Mir-1422-P7 NC_041749.1: 94741858-94741917 [-]
Mir-1422-P8 NC_041749.1: 94743026-94743086 [-]
Mir-1422-P9 NC_041749.1: 94746545-94746603 [-]
Mir-1422-P10 NC_041749.1: 94747570-94747631 [-]
Mir-1422-P11 NC_041749.1: 94748332-94748391 [-]
Mir-1422-P18 NC_041749.1: 94754440-94754500 [-]
Mir-1422-P14 NC_041749.1: 94758854-94758914 [-]
Mir-1422-P15 NC_041749.1: 94759650-94759706 [-]
Mir-1422-P16 NC_041749.1: 94762729-94762788 [-]
Mir-1422-P17 NC_041749.1: 94763638-94763693 [-]
Mir-1376 NC_041749.1: 94770564-94770621 [-]
Precursor
(pre-Mir +30nt flank)
GGAGCGAUGGAGUGAACAUCGAGGCUCGGGUUUCAUUCAAGCCGUCUUUUCUUCCUAUUGGUAAUAAGAAAAUUCUGACUUGAUUGAUUCCCGAGUCAGAUGAUAUACACAGAACAGAUCA
Get precursor sequence
Structure
        10           20        30        40         50         
GGAGCGAUGGAGUGAAC---|  GA        UU   U     C  UC-      UCCUAU 
                    AUC  GGCUCGGG  UCA UCAAG CG   UUUUCU      U
                    UAG  CUGAGCCC  AGU AGUUC GU   AAAAGA      G
ACUAGACAAGACACAUAUAG^  A-        UU   U     A  CUU      AUAAUG 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-1422-P18_5p

mirBase accessionMIMAT0006939
Sequence
0- UUUCAUUCAAGCCGUCUUUUCU -22
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Star sequence

Oan-Mir-1422-P18_3p*

mirBase accessionNone
Sequence
38- AAAAUUCUGACUUGAUUGAUUCC -61
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