MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-430-P57

Family name MIR-430 (all species)
Seed AAGUGCG
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-1420e
Paralogues Oan-Mir-430-P1  Oan-Mir-430-P2  Oan-Mir-430-P3  Oan-Mir-430-P4  Oan-Mir-430-P53  Oan-Mir-430-P54  Oan-Mir-430-P55  Oan-Mir-430-P56  Oan-Mir-430-P58  Oan-Mir-430-P59  Oan-Mir-430-P60  Oan-Mir-430-P61 
Orthologues
Node of Origin (locus) O. anatinus
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041737.1: 54190187-54190244 [+]
Clustered miRNAs
(< 50kb from Mir-430-P57)
Mir-430-P53 NC_041737.1: 54187151-54187209 [+]
Mir-430-P54 NC_041737.1: 54187300-54187360 [+]
Mir-430-P55 NC_041737.1: 54187861-54187919 [+]
Mir-430-P56 NC_041737.1: 54190035-54190095 [+]
Mir-430-P57 NC_041737.1: 54190187-54190244 [+]
Mir-430-P58 NC_041737.1: 54190481-54190536 [+]
Mir-430-P60 NC_041737.1: 54191452-54191511 [+]
Mir-430-P59 NC_041737.1: 54191591-54191649 [+]
Precursor
(pre-Mir +30nt flank)
CUGAACUCGUUCUUCGCCCAGCUAUGUCUGUCUGACCCAGCUGUACUCUCUGGACAUAAAAAGCAGAAAGUGCGACUGGAUCGGAUCGGUAUGGUUGGGAUGAUCACGGCAUGGAAGC
Get precursor sequence
Structure
        10           20        30        40        50        
CUGAACUCGUUCUUCGC---|       GU U      C    C      C   GGACAU 
                    CCAGCUAU  C GUCUGA CCAG UGUACU UCU      \
                    GGUUGGUA  G UAGGCU GGUC GCGUGA AGA      A
CGAAGGUACGGCACUAGUAG^       UG C      A    A      A   CGAAAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-430-P57_5p*

mirBase accessionMIMAT0026755
Sequence
0- UCUGACCCAGCUGUACUCUCU -21
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Mature sequence

Oan-Mir-430-P57_3p

mirBase accessionMIMAT0006929
Sequence
36- AAAGUGCGACUGGAUCGGAUCG -58
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