| MirGeneDB ID | Obi-Mir-12506-v2 |
|---|
| Family name |
MIR-12506 (all species) |
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| Seed |
GGAUCUU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-12506-v1
|
|---|
| Orthologues |
Npo-Mir-12506
Ovu-Mir-12506-v2
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
|
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Genome context
(PRJNA270931_OBI) |
KQ418355: 389258-389321 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGCUGUUACAGAAGUCAGCCGUUUGUAUGCAGUUAGUGGUAAAGCCCUUGCAUUAGGUAUCUGAAGUGUUGCAGGAUCUUUAGUCACUAGCUGCAUAAGGAUGGCACCGUACAUCAUGUGAUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCUGUUACAGAAGUCA-- UG -| CC AUUAGGUAU
GCCGUU UAUGCAGUUAGUGG UAAAG CUUGC \
CGGUAG AUACGUCGAUCACU AUUUC GGACG C
CAUAGUGUACUACAUGCCA GA G^ UA UUGUGAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12506-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUUAGUGGUAAAGCCCUUGC -21
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12506-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
42- AGGAUCUUUAGUCACUAGCUGC -64
Get sequence
|
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