MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12566-P3

Family name MIR-12566 (all species)
Seed AAAUGCG
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Mir-12566-P1  Obi-Mir-12566-P2 
Orthologues Ovu-Mir-12566-P3 
Node of Origin (locus) Octopus
Node of Origin (family) Octopus
Genome context
(PRJNA270931_OBI)
KQ417213: 421458-421518 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAAUCAGAAAUAUUGCAAAUAAAGGAAGCAAUUCUUGGUGCAUUCUACAGUAAUUUUAUAACAUGUAAAUGCGCCAUGAUUUGCACUUCUUUGUUUGCUUCUUGCAUCAAAGACUGA
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Structure
        10         20        30         40        50        60
AAAAAAAUCAGAAAUAUU-            A-|   U  U         C    GUAAUU 
                   GCAAAUAAAGGA  GCAA UC UGGUGCAUU UACA      U
                   CGUUUGUUUCUU  CGUU AG ACCGCGUAA AUGU      U
AGUCAGAAACUACGUUCUU            CA^   U  U         -    ACAAUA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Mir-12566-P3_5p*

mirBase accessionNone
Sequence
0- AGCAAUUCUUGGUGCAUUCUACA -23
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Mature sequence

Obi-Mir-12566-P3_3p

mirBase accessionNone
Sequence
39- UAAAUGCGCCAUGAUUUGCACU -61
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