| MirGeneDB ID | Obi-Mir-12566-P2 |
|---|
| Family name |
MIR-12566 (all species) |
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| Seed |
GUGAUUU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-12566-P1
Obi-Mir-12566-P3
|
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| Orthologues |
Ovu-Mir-12566-P2
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ417213: 420569-420627 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAUUUGCUGAUUUGUUGCUUUUGAUGACAAGUGAUUUGGAACGCAUUUAGCAGUAUGUUAAAUUCUGAAAUGCGAUCCAAAUCACUUGACAUGAUUAGCACUGCGACUGUUGGAUGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUUUGCUGAUUUGUU--| UUUG A A AG UAUGU
GCU AUG CAAGUGAUUUGGA CGCAUUU CAG \
CGA UAC GUUCACUAAACCU GCGUAAA GUC U
CAGUAGGUUGUCAGCGUCA^ UUAG A A -- UUAAA
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12566-P2_5p |
| mirBase accession | None |
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| Sequence |
0- AGUGAUUUGGAACGCAUUUAGCAG -24
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12566-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAAAUGCGAUCCAAAUCACUUG -59
Get sequence
|
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