MirGeneDB ID | Pab-Mir-550-P2 |
Family name |
MIR-550 (all species) |
Seed |
GUCUUAC |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-550-P1
|
Orthologues |
Cja-Mir-550
Hsa-Mir-550-P2a
Hsa-Mir-550-P2b
Mml-Mir-550-P2
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 54745647-54745708 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGACAGUGUCUUACUCCCUCAGGCACAUCUUCAGGCACAUCUUACUCUCCUCCAAUUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGUAUUUUGAUGCUU---| C G UGCA - CCUGUUGU
UG UG CUGG GUGCCUGAGGGAGUAAGA GC \
AC AC GACU CACGGACUCCCUCAUUCU UG U
GUUUAACCUCCUCUCAUUCU^ - G UCUA G ACAGAAUG
120 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Pab-Mir-550-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
Get sequence
|
Mature sequence |
Pab-Mir-550-P2_3p |
mirBase accession | None |
Sequence |
39- UGUCUUACUCCCUCAGGCACAUC -62
Get sequence
|