MirGeneDB ID | Pab-Mir-550-P2 |
---|---|
Family name | MIR-550 (all species) |
Seed | GUCUUAC |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-550-P1 |
Orthologues | Cja-Mir-550 Hsa-Mir-550-P2a Hsa-Mir-550-P2b Mml-Mir-550-P2 |
Node of Origin (locus) | Catarrhini |
Node of Origin (family) | Simiiformes |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 54745647-54745708 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGACAGUGUCUUACUCCCUCAGGCACAUCUUCAGGCACAUCUUACUCUCCUCCAAUUUGGet precursor sequence |
Structure | 10 20 30 40 50 UUGGUAUUUUGAUGCUU---| C G UGCA - CCUGUUGU UG UG CUGG GUGCCUGAGGGAGUAAGA GC \ AC AC GACU CACGGACUCCCUCAUUCU UG U GUUUAACCUCCUCUCAUUCU^ - G UCUA G ACAGAAUG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Pab-Mir-550-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
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|
Mature sequence | Pab-Mir-550-P2_3p |
mirBase accession | None |
Sequence |
39- UGUCUUACUCCCUCAGGCACAUC -62
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