MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-550-P2

Family name MIR-550 (all species)
Seed GUCUUAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-550-P1 
Orthologues Cja-Mir-550  Hsa-Mir-550-P2a  Hsa-Mir-550-P2b  Mml-Mir-550-P2 
Node of Origin (locus) Catarrhini
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054685.2: 54745647-54745708 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGACAGUGUCUUACUCCCUCAGGCACAUCUUCAGGCACAUCUUACUCUCCUCCAAUUUG
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Structure
        10           20        30        40         50          
UUGGUAUUUUGAUGCUU---| C  G    UGCA                  -  CCUGUUGU 
                    UG UG CUGG    GUGCCUGAGGGAGUAAGA GC        \
                    AC AC GACU    CACGGACUCCCUCAUUCU UG        U
GUUUAACCUCCUCUCAUUCU^ -  G    UCUA                  G  ACAGAAUG 
120       110        100        90        80        70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-550-P2_5p*

mirBase accessionNone
Sequence
0- AGUGCCUGAGGGAGUAAGAGCCC -23
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Mature sequence

Pab-Mir-550-P2_3p

mirBase accessionNone
Sequence
39- UGUCUUACUCCCUCAGGCACAUC -62
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