| MirGeneDB ID | Pab-Mir-550-P1 |
|---|---|
| Family name | MIR-550 (all species) |
| Seed | GUCUUAC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | Pab-Mir-550-P2 |
| Orthologues | Cja-Mir-550 Hsa-Mir-550-P1 Mml-Mir-550-P1 |
| Node of Origin (locus) | Catarrhini |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 55464022-55464083 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGACAGUGUCUUACUCCCUCAGGCACAUCUCCAACAAGUCUCUUGCUCUCCUCCAAUUUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGUAUUUUGAUGCUUU-- GGC UGCA -| CCUGUUGU GCU UGG GUGCCUGAGGGAGUAAGA GC \ UGA ACC CACGGACUCCCUCAUUCU UG U UUUAACCUCCUCUCGUUCUC ACA UCUA G^ ACAGAAUG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UGUG in loop |
| Star sequence | Pab-Mir-550-P1_5p* |
| mirBase accession | None |
| Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
Get sequence
|
| Mature sequence | Pab-Mir-550-P1_3p |
| mirBase accession | None |
| Sequence |
39- UGUCUUACUCCCUCAGGCACAUC -62
Get sequence
|
