| MirGeneDB ID | Pab-Mir-550-P1 |
|---|
| Family name |
MIR-550 (all species) |
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| Seed |
GUCUUAC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
Pab-Mir-550-P2
|
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| Orthologues |
Cja-Mir-550
Hsa-Mir-550-P1
Mml-Mir-550-P1
|
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| Node of Origin (locus) |
Catarrhini
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 55464022-55464083 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUUGUAAGACAGUGUCUUACUCCCUCAGGCACAUCUCCAACAAGUCUCUUGCUCUCCUCCAAUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGUAUUUUGAUGCUUU-- GGC UGCA -| CCUGUUGU
GCU UGG GUGCCUGAGGGAGUAAGA GC \
UGA ACC CACGGACUCCCUCAUUCU UG U
UUUAACCUCCUCUCGUUCUC ACA UCUA G^ ACAGAAUG
120 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-550-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-550-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGUCUUACUCCCUCAGGCACAUC -62
Get sequence
|
|---|
