MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-550

Family name MIR-550 (all species)
Seed GUCUUAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-550-P1  Hsa-Mir-550-P2a  Hsa-Mir-550-P2b  Mml-Mir-550-P1  Mml-Mir-550-P2  Pab-Mir-550-P1  Pab-Mir-550-P2 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021922.1: 25232853-25232911 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGUACUUUGAUGCUUUGCUGGCUGCUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUAAGAUAGUGUCUUAUUCCCUCUGGCAUAUCUCCAGCAAGUACCUUGCUCUCCUCCAAUUU
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Structure
        10          20        30        40         50        
CUGGUACUUUGAUGCUU--    G    CUGCA     U            -| CCUGUU 
                   UGCU GCUG     GUGCC GAGGGAGUAAGA GC      G
                   AUGA CGAC     UACGG CUCCCUUAUUCU UG      U
UUUAACCUCCUCUCGUUCC    A    CUCUA     U            G^ AUAGAA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Cja-Mir-550_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUGCCUGAGGGAGUAAGAGCCC -23
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Mature sequence

Cja-Mir-550_3p (predicted)
mirBase accessionNone
Sequence 
36- UGUCUUAUUCCCUCUGGCAUAUC -59
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