| MirGeneDB ID | Cja-Mir-550 |
|---|---|
| Family name | MIR-550 (all species) |
| Seed | GUCUUAU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-550-P1 Hsa-Mir-550-P2a Hsa-Mir-550-P2b Mml-Mir-550-P1 Mml-Mir-550-P2 Pab-Mir-550-P1 Pab-Mir-550-P2 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021922.1: 25232853-25232911 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGGUACUUUGAUGCUUUGCUGGCUGCUGCAGUGCCUGAGGGAGUAAGAGCCCUGUUGUAAGAUAGUGUCUUAUUCCCUCUGGCAUAUCUCCAGCAAGUACCUUGCUCUCCUCCAAUUUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGGUACUUUGAUGCUU-- G CUGCA U -| CCUGUU UGCU GCUG GUGCC GAGGGAGUAAGA GC G AUGA CGAC UACGG CUCCCUUAUUCU UG U UUUAACCUCCUCUCGUUCC A CUCUA U G^ AUAGAA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Cja-Mir-550_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUGCCUGAGGGAGUAAGAGCCC -23
Get sequence
|
| Mature sequence | Cja-Mir-550_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UGUCUUAUUCCCUCUGGCAUAUC -59
Get sequence
|
