MirGeneDB ID | Pab-Mir-5687 |
Family name |
MIR-5687 (all species) |
Seed |
UGACUCU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-5687
Hsa-Mir-5687
Mml-Mir-5687
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 64614122-64614179 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCUAGUUGUUCUCUGCUCUCCUCACUUAGCUGACUCUGAAAUCUUCUAAAUGGUACCCACUUUAUUUAGAACAUUUUAGGGUCAAAUAAGUACAGGUUGGAAUCCUGAGUGCACCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUAGUUGUUCUCUGCUCU- C-| GC C GGUAC
CCU ACUUA UGACUCUGAAAU UUCUAAAU C
GGA UGAAU ACUGGGAUUUUA AAGAUUUA C
CACCACGUGAGUCCUAAGGUU CA^ AA C UUUCA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-5687_5p (predicted) |
mirBase accession | None |
Sequence |
0- CUGACUCUGAAAUCUUCUAAAU -22
Get sequence
|
Co-mature sequence |
Pab-Mir-5687_3p (predicted) |
mirBase accession | None |
Sequence |
36- UUAGAACAUUUUAGGGUCAAAU -58
Get sequence
|