MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-5687

Family name MIR-5687 (all species)
Seed UGACUCU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-5687  Hsa-Mir-5687  Mml-Mir-5687 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054683.2: 64614122-64614179 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUAGUUGUUCUCUGCUCUCCUCACUUAGCUGACUCUGAAAUCUUCUAAAUGGUACCCACUUUAUUUAGAACAUUUUAGGGUCAAAUAAGUACAGGUUGGAAUCCUGAGUGCACCAC
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Structure
        10        20          30        40        50        
CUCUAGUUGUUCUCUGCUCU-   C-|    GC            C        GGUAC 
                     CCU  ACUUA  UGACUCUGAAAU UUCUAAAU     C
                     GGA  UGAAU  ACUGGGAUUUUA AAGAUUUA     C
CACCACGUGAGUCCUAAGGUU   CA^    AA            C        UUUCA 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-5687_5p (predicted)

mirBase accessionNone
Sequence
0- CUGACUCUGAAAUCUUCUAAAU -22
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Co-mature sequence

Pab-Mir-5687_3p (predicted)

mirBase accessionNone
Sequence
36- UUAGAACAUUUUAGGGUCAAAU -58
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