MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-1995

Family name MIR-1995 (all species)
Seed UACAUCU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-1995  Efe-Mir-1995-P1  Efe-Mir-1995-P2  Ofu-Mir-1995  Snu-Mir-1995 
Node of Origin (locus) Annelida
Node of Origin (family) Annelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000005.1: 31347921-31347977 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUCCAGAAAAGACCGCUAGGGUUCCCUGUACAUCUCACAUUGUGACCAUGUGACUUAACAAUGGUCUCUGUGUGAAAUGUCGAUAGAUCCCUUGGCUAUCCAACAAUCACAACG
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Structure
        10         20        30          40        50        
UAGUUCCAGAAAAGACC-       UUCC    --|   C      UGU      GUGAC 
                  GCUAGGG    CUGU  ACAU UCACAU   GACCAU     \
                  CGGUUCC    GAUA  UGUA AGUGUG   CUGGUA     U
GCAACACUAACAACCUAU       CUA-    GC^   A      UCU      ACAAU 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1995_5p

mirBase accessionNone
Sequence
0- GUACAUCUCACAUUGUGACCAU -22
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Star sequence

Pdu-Mir-1995_3p*

mirBase accessionNone
Sequence
35- GGUCUCUGUGUGAAAUGUCGAU -57
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