MirGeneDB ID | Pdu-Mir-1995 |
Family name |
MIR-1995 (all species) |
Seed |
UACAUCU |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Cte-Mir-1995
Efe-Mir-1995-P1
Efe-Mir-1995-P2
Ofu-Mir-1995
Snu-Mir-1995
|
Node of Origin (locus) |
Annelida
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Node of Origin (family) |
Annelida
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000005.1: 31347921-31347977 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAGUUCCAGAAAAGACCGCUAGGGUUCCCUGUACAUCUCACAUUGUGACCAUGUGACUUAACAAUGGUCUCUGUGUGAAAUGUCGAUAGAUCCCUUGGCUAUCCAACAAUCACAACG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAGUUCCAGAAAAGACC- UUCC --| C UGU GUGAC
GCUAGGG CUGU ACAU UCACAU GACCAU \
CGGUUCC GAUA UGUA AGUGUG CUGGUA U
GCAACACUAACAACCUAU CUA- GC^ A UCU ACAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-1995_5p |
mirBase accession | None |
Sequence |
0- GUACAUCUCACAUUGUGACCAU -22
Get sequence
|
Star sequence |
Pdu-Mir-1995_3p* |
mirBase accession | None |
Sequence |
35- GGUCUCUGUGUGAAAUGUCGAU -57
Get sequence
|