MirGeneDB ID | Pdu-Mir-2707 |
Family name |
MIR-2707 (all species) |
Seed |
GUCAAGC |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Cte-Mir-2707
Efe-Mir-2707-v1
Efe-Mir-2707-v2
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Node of Origin (locus) |
Pleistoannelida
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Node of Origin (family) |
Pleistoannelida
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000026.1: 3813113-3813171 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACAGUUCUUCAGCAUUGUGUGGCAAGCGUCUGUCAAGCAGAUUAAGUAUUGUUGGUAAUGGAAUAAAUACUUAUUUUGCUUCUGACAGAUGCUUGUCACGAUUUAUCUCCAGAAAGAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAGUUCUUCAGCAUUG-- --| U GUUGGUA
UGUGGCAAGCGUCUGUCA AGCAGA UAAGUAUU \
GCACUGUUCGUAGACAGU UCGUUU AUUCAUAA A
CAAGAAAGACCUCUAUUUA CU^ U AUAAGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on both arms. |
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-2707_5p |
mirBase accession | None |
Sequence |
0- UGUCAAGCAGAUUAAGUAUUGU -22
Get sequence
|
Star sequence |
Pdu-Mir-2707_3p* |
mirBase accession | None |
Sequence |
35- AAUACUUAUUUUGCUUCUGACAGA -59
Get sequence
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