MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-2707

Family name MIR-2707 (all species)
Seed GUCAAGC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-2707  Efe-Mir-2707-v1  Efe-Mir-2707-v2 
Node of Origin (locus) Pleistoannelida
Node of Origin (family) Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000026.1: 3813113-3813171 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGUUCUUCAGCAUUGUGUGGCAAGCGUCUGUCAAGCAGAUUAAGUAUUGUUGGUAAUGGAAUAAAUACUUAUUUUGCUUCUGACAGAUGCUUGUCACGAUUUAUCUCCAGAAAGAAC
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Structure
        10          20        30          40        50        
ACAGUUCUUCAGCAUUG--                  --|     U        GUUGGUA 
                   UGUGGCAAGCGUCUGUCA  AGCAGA UAAGUAUU       \
                   GCACUGUUCGUAGACAGU  UCGUUU AUUCAUAA       A
CAAGAAAGACCUCUAUUUA                  CU^     U        AUAAGGU 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-2707_5p

mirBase accessionNone
Sequence
0- UGUCAAGCAGAUUAAGUAUUGU -22
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Star sequence

Pdu-Mir-2707_3p*

mirBase accessionNone
Sequence
35- AAUACUUAUUUUGCUUCUGACAGA -59
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