MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-87-o33

Family name MIR-87 (all species)
Seed UGAGCAA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000001.1: 126238903-126238960 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCUCCUCCGCUAGGUCGUCUGUCGGUCCUGCCUGAAAUUUUCGCUCAGACCUGUAAUCAAAAGGUGAGCAAAGUUUCAGGUGUGUCUGAUGGGUGAAAUGUCUCCACAGGAACAG
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Structure
        10          20        30        40        50          
UGUCCUCCUCCGCUAGG--| GU       UCC             C    AG    GUAA 
                   UC  CUGUCGG   UGCCUGAAAUUUU GCUC  ACCU    \
                   AG  GGUAGUC   GUGGACUUUGAAA CGAG  UGGA    U
GACAAGGACACCUCUGUAA^ UG       UGU             -    --    AAAC 
      110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-87-o33_5p*

mirBase accessionNone
Sequence
0- CUGCCUGAAAUUUUCGCUCAGACCU -25
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Mature sequence

Pdu-Mir-87-o33_3p

mirBase accessionNone
Sequence
36- GUGAGCAAAGUUUCAGGUGUGU -58
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