MirGeneDB ID | Pdu-Mir-87-o33 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Gsp-Mir-87
Sne-Mir-87
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Node of Origin (locus) |
P. dumerilii
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Node of Origin (family) |
Protostomia
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 126238903-126238960 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGUCCUCCUCCGCUAGGUCGUCUGUCGGUCCUGCCUGAAAUUUUCGCUCAGACCUGUAAUCAAAAGGUGAGCAAAGUUUCAGGUGUGUCUGAUGGGUGAAAUGUCUCCACAGGAACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCCUCCUCCGCUAGG--| GU UCC C AG GUAA
UC CUGUCGG UGCCUGAAAUUUU GCUC ACCU \
AG GGUAGUC GUGGACUUUGAAA CGAG UGGA U
GACAAGGACACCUCUGUAA^ UG UGU - -- AAAC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-87-o33_5p* |
mirBase accession | None |
Sequence |
0- CUGCCUGAAAUUUUCGCUCAGACCU -25
Get sequence
|
Mature sequence |
Pdu-Mir-87-o33_3p |
mirBase accession | None |
Sequence |
36- GUGAGCAAAGUUUCAGGUGUGU -58
Get sequence
|