MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-132-o3

Family name MIR-132 (all species)
Seed AACAGUC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-132
Paralogues Pma-Mir-132-o1  Pma-Mir-132-o2 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
PIZI01000127.1: 315360-315423 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGCGCUUGGUUUCUUCGCUGCCCGGGCGCCCGUGGCGUUAGACUGAUGCUGUGAGGCUCCACAGAGGCAGUAACAGUCUACAGCCAUGGACACCCGGCGGCGGGCUGCUCCACGGUGGGCGG
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Structure
        10           20        30        40        50        60 
GCCGCGCUUGGUUUCUU---|      C   CGC       GU       A    GUGAGGCU 
                    CGCUGCC GGG   CCGUGGC  UAGACUG UGCU        C
                    GCGGCGG CCC   GGUACCG  AUCUGAC AUGA        C
GGCGGGUGGCACCUCGUCGG^      -   ACA       AC       A    CGGAGACA 
  120       110       100         90        80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-132-o3_5p*

mirBase accessionMIMAT0019458
Sequence
0- CCCGUGGCGUUAGACUGAUGCU -22
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Mature sequence

Pma-Mir-132-o3_3p

mirBase accessionMIMAT0019459
Sequence
42- UAACAGUCUACAGCCAUGGACA -64
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