Mir-132-o2

MirGeneDB ID

Pma-Mir-132-o2

Family name

MIR-132 (all species)

Seed

CAGUCUU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-212

Paralogues

Pma-Mir-132-o1 Pma-Mir-132-o3

Orthologues

Aca-Mir-132-P2 Ami-Mir-132-P2 Bta-Mir-132-P2 Cfa-Mir-132-P2 Cja-Mir-132-P2 Cmi-Mir-132-P2 Cpi-Mir-132-P2 Cpo-Mir-132-P2 Dno-Mir-132-P2 Dre-Mir-132-P2a Dre-Mir-132-P2b Eca-Mir-132-P2 Gga-Mir-132-P2 Gja-Mir-132-P2 Gmo-Mir-132-P2a Gmo-Mir-132-P2b Hsa-Mir-132-P2 Laf-Mir-132-P2 Lch-Mir-132-P2 Loc-Mir-132-P2 Mal-Mir-132-P2a Mal-Mir-132-P2b Mdo-Mir-132-P2 Mml-Mir-132-P2 Mmr-Mir-132-P2 Mmu-Mir-132-P2 Mun-Mir-132-P2 Neu-Mir-132-P2 Oan-Mir-132-P2 Ocu-Mir-132-P2 Pab-Mir-132-P2 Pbv-Mir-132-P2 Rno-Mir-132-P2 Sha-Mir-132-P2 Spt-Mir-132-P2 Tgu-Mir-132-P2 Tni-Mir-132-P2a Tni-Mir-132-P2b Xla-Mir-132-P2c Xla-Mir-132-P2d Xtr-Mir-132-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NW_022638381.1: 2463-2521 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGGGGGAAUGAUUUAGCCACGCCCCGCGCGUCGUGACGUGGGAUUGAUUACGUCAUCGCGCAGUAACAGUCUUACGUCAUGGCUGCGCGGGGCGGAGCACCGACAACCAACGCGCGU

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Structure

        10          20        30         40        50         
GUGGGGGGAAUGAUUUA--  CA          -|                A   CGUCAU 
                   GC  CGCCCCGCGC GUCGUGACGUGGGAUUG UUA      \
                   CG  GCGGGGCGCG CGGUACUGCAUUCUGAC AAU      C
UGCGCGCAACCAACAGCCA  AG          U^                -   GACGCG 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-132-o2_5p*

mirBase accession

MIMAT0019523

Sequence

0- CGUCGUGACGUGGGAUUGAUUA -22

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Mature sequence

Pma-Mir-132-o2_3p

mirBase accession

MIMAT0019524

Sequence

37- ACAGUCUUACGUCAUGGCUGCG -59

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