MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-132-P2b

Family name MIR-132 (all species)
Seed AACAGUC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-212-2
Paralogues Gmo-Mir-132-P1a  Gmo-Mir-132-P1b  Gmo-Mir-132-P2a 
Orthologues Aca-Mir-132-P2  Ami-Mir-132-P2  Bta-Mir-132-P2  Cfa-Mir-132-P2  Cja-Mir-132-P2  Cmi-Mir-132-P2  Cpi-Mir-132-P2  Cpo-Mir-132-P2  Dno-Mir-132-P2  Dre-Mir-132-P2b  Eca-Mir-132-P2  Gga-Mir-132-P2  Gja-Mir-132-P2  Hsa-Mir-132-P2  Laf-Mir-132-P2  Lch-Mir-132-P2  Loc-Mir-132-P2  Mal-Mir-132-P2b  Mdo-Mir-132-P2  Mml-Mir-132-P2  Mmr-Mir-132-P2  Mmu-Mir-132-P2  Mun-Mir-132-P2  Neu-Mir-132-P2  Oan-Mir-132-P2  Ocu-Mir-132-P2  Pab-Mir-132-P2  Pbv-Mir-132-P2  Pma-Mir-132-o2  Rno-Mir-132-P2  Sha-Mir-132-P2  Spt-Mir-132-P2  Tgu-Mir-132-P2  Tni-Mir-132-P2b  Xtr-Mir-132-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4327: 47133-47199 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-132-P2b)
Mir-132-P2b GeneScaffold_4327: 47133-47199 [+] UCSC Ensembl
Mir-132-P1b GeneScaffold_4327: 47489-47550 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCCCUCAGCCCUGAGCCUGAGCCUCAGCACCUUGGCUUUAGACUGCUUACUGCUCCCCAGCUGACAGCCCAGUAACAGUCUACAGUCAUGGCUACUGAAGCCGGGCAGCCGCUCCCCCGCCCUCC
Get precursor sequence
Structure
        10           20        30         40        50        60   
UGGCCCUCAGCCCUGAG---|   A  C    CA-  U     U       C     GCUCCCCAG 
                    CCUG GC UCAG   CC UGGCU UAGACUG UUACU         \
                    GGGC CG AGUC   GG ACUGA AUCUGAC AAUGA         C
CCUCCCGCCCCCUCGCCGAC^   -  A    AUC  U     C       -     CCCGACAGU 
     120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-132-P2b_5p*

mirBase accessionMIMAT0046034
Sequence
0- ACCUUGGCUUUAGACUGCUUACU -23
Get sequence
Mature sequence

Gmo-Mir-132-P2b_3p

mirBase accessionMIMAT0044280
Sequence
44- UAACAGUCUACAGUCAUGGCUAC -67
Get sequence