Mir-132-P1b

MirGeneDB ID

Gmo-Mir-132-P1b

Family name

MIR-132 (all species)

Seed

CCGUGGC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-132-2

Paralogues

Gmo-Mir-132-P1a Gmo-Mir-132-P2a Gmo-Mir-132-P2b

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1b Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1b Xtr-Mir-132-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4327: 47489-47550 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-132-P1b)

Mir-132-P2b GeneScaffold_4327: 47133-47199 [+] UCSC Ensembl
Mir-132-P1b GeneScaffold_4327: 47489-47550 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCACCUCCUCCCUUGCUGUCUCCAUGGCGACCGUGGCUUUAGAUUGUUACUCUAGCAACAGCACCAUGGUAACAGUCUACAGCCAUGGUCGUUAGGGACAGGUGUCACAGGAACUGAGAGA

Get precursor sequence

Structure

        10            20        30        40        50        60
UCCACCUCCUCCCUUGC----|   U  A              U            CUAGCAA 
                     UGUC CC UGGCGACCGUGGCU UAGAUUGUUACU       C
                     ACAG GG AUUGCUGGUACCGA AUCUGACAAUGG       A
AGAGAGUCAAGGACACUGUGG^   -  -              C            UACCACG 
120       110       100          90        80        70