MirGeneDB 3.0

MirGeneDB ID

Gja-Mir-132-P1

Family name MIR-132 (all species)
Seed CCGUGGC
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-132-P2 
Orthologues Aca-Mir-132-P1  Ami-Mir-132-P1  Bta-Mir-132-P1  Cfa-Mir-132-P1  Cja-Mir-132-P1  Cmi-Mir-132-P1  Cpi-Mir-132-P1  Cpo-Mir-132-P1  Dno-Mir-132-P1  Dre-Mir-132-P1a  Dre-Mir-132-P1b  Ebu-Mir-132-P1e  Ebu-Mir-132-P1f  Eca-Mir-132-P1  Ete-Mir-132-P1  Gga-Mir-132-P1  Gmo-Mir-132-P1a  Gmo-Mir-132-P1b  Hsa-Mir-132-P1  Laf-Mir-132-P1  Lch-Mir-132-P1  Loc-Mir-132-P1  Mal-Mir-132-P1a  Mal-Mir-132-P1b  Mdo-Mir-132-P1  Mml-Mir-132-P1  Mmr-Mir-132-P1  Mmu-Mir-132-P1  Mun-Mir-132-P1  Neu-Mir-132-P1  Oan-Mir-132-P1  Ocu-Mir-132-P1  Pab-Mir-132-P1  Pbv-Mir-132-P1  Pma-Mir-132-o1  Rno-Mir-132-P1  Sha-Mir-132-P1  Spt-Mir-132-P1  Sto-Mir-132-P1  Tgu-Mir-132-P1  Tni-Mir-132-P1a  Tni-Mir-132-P1b  Xla-Mir-132-P1c  Xla-Mir-132-P1d  Xtr-Mir-132-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015173122.1: 1268374-1268433 [-]
Precursor
(pre-Mir +30nt flank)
GCCGCCAGCUCAUCCUGUGUCUCCAGGGCAACCGUGGCUUUAGAUUGUUACUGUGUGGAUGGGAGUGGUAACAGUCUACAGCCAUGGUUGUCGGGAAUGGAUGCAUUAGCAUCAUCGGAA
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Structure
        10        20           30        40        50         
GCCGCCAGCUCAUCCUGU   ---|  AG             U            GUGUGG 
                  GUC   UCC  GGCAACCGUGGCU UAGAUUGUUACU      A
                  UAG   AGG  CUGUUGGUACCGA AUCUGACAAUGG      U
AAGGCUACUACGAUUACG   GUA^  G-             C            UGAGGG 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Gja-Mir-132-P1_5p

mirBase accessionNone
Sequence
0- ACCGUGGCUUUAGAUUGUUACU -22
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Star sequence

Gja-Mir-132-P1_3p*

mirBase accessionNone
Sequence
38- UAACAGUCUACAGCCAUGGUUG -60
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