Mir-132-P1

MirGeneDB ID

Gja-Mir-132-P1

Family name

MIR-132 (all species)

Seed

CCGUGGC

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-132-P2

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1a Dre-Mir-132-P1b Ebu-Mir-132-P1e Ebu-Mir-132-P1f Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gmo-Mir-132-P1a Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1a Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1a Tni-Mir-132-P1b Xla-Mir-132-P1c Xla-Mir-132-P1d Xtr-Mir-132-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015173122.1: 1268374-1268433 [-]

Precursor
(pre-Mir +30nt flank)

GCCGCCAGCUCAUCCUGUGUCUCCAGGGCAACCGUGGCUUUAGAUUGUUACUGUGUGGAUGGGAGUGGUAACAGUCUACAGCCAUGGUUGUCGGGAAUGGAUGCAUUAGCAUCAUCGGAA

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Structure

        10        20           30        40        50         
GCCGCCAGCUCAUCCUGU   ---|  AG             U            GUGUGG 
                  GUC   UCC  GGCAACCGUGGCU UAGAUUGUUACU      A
                  UAG   AGG  CUGUUGGUACCGA AUCUGACAAUGG      U
AAGGCUACUACGAUUACG   GUA^  G-             C            UGAGGG 
.       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-132-P1_5p

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

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Star sequence

Gja-Mir-132-P1_3p*

mirBase accession

None

Sequence

38- UAACAGUCUACAGCCAUGGUUG -60

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