MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-132-P1a

Family name MIR-132 (all species)
Seed AACAGUC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-132
Paralogues Tni-Mir-132-P1b  Tni-Mir-132-P2a  Tni-Mir-132-P2b 
Orthologues Aca-Mir-132-P1  Ami-Mir-132-P1  Bta-Mir-132-P1  Cfa-Mir-132-P1  Cja-Mir-132-P1  Cmi-Mir-132-P1  Cpi-Mir-132-P1  Cpo-Mir-132-P1  Dno-Mir-132-P1  Dre-Mir-132-P1a  Eca-Mir-132-P1  Ete-Mir-132-P1  Gga-Mir-132-P1  Gja-Mir-132-P1  Gmo-Mir-132-P1a  Hsa-Mir-132-P1  Laf-Mir-132-P1  Lch-Mir-132-P1  Loc-Mir-132-P1  Mal-Mir-132-P1a  Mdo-Mir-132-P1  Mml-Mir-132-P1  Mmr-Mir-132-P1  Mmu-Mir-132-P1  Mun-Mir-132-P1  Neu-Mir-132-P1  Oan-Mir-132-P1  Ocu-Mir-132-P1  Pab-Mir-132-P1  Pbv-Mir-132-P1  Pma-Mir-132-o1  Rno-Mir-132-P1  Sha-Mir-132-P1  Spt-Mir-132-P1  Sto-Mir-132-P1  Tgu-Mir-132-P1  Xtr-Mir-132-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
Un_random: 63608572-63608634 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-132-P1a)
Mir-132-P2a Un_random: 63608305-63608373 [+] UCSC Ensembl
Mir-132-P1a Un_random: 63608572-63608634 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUCAUAUUUCCGCAGUUGUCUCCAUGGUUACCGUGGCAUUAGAUUGUUACUGUAGCAACUGCACCAGCGGUAACAGUCUACAGCCAUGGUCGCUAGGGGGCAAGCCAGACAACUGUUGAGAA
Get precursor sequence
Structure
        10           20        30        40        50        60 
AAUCAUAUUUCCGCAGU---|      A    U        AU            GUAGCAAC 
                    UGUCUCC UGGU ACCGUGGC  UAGAUUGUUACU        \
                    ACGGGGG AUCG UGGUACCG  AUCUGACAAUGG        U
AAGAGUUGUCAACAGACCGA^      -    C        AC            CGACCACG 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-132-P1a_5p*

mirBase accessionNone
Sequence
0- ACCGUGGCAUUAGAUUGUUACU -22
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Mature sequence

Tni-Mir-132-P1a_3p

mirBase accessionMIMAT0003060
Sequence
41- UAACAGUCUACAGCCAUGGUCG -63
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