Mir-132-P1b

MirGeneDB ID

Tni-Mir-132-P1b

Family name

MIR-132 (all species)

Seed

AACAGUC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-132-P1a Tni-Mir-132-P2a Tni-Mir-132-P2b

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1b Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Xtr-Mir-132-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

7: 7924414-7924476 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUCCUCCAUCCUGCUGUCUCCAUGGCGACCGUGGCUUUAGAUUGUUACUCUUUGCAAGAGCUCCAUGGUAACAGUCUACAGCCAUGGUCGUUAGGGGCAGGUGUCAUCAGGAAAGUUAAA

Get precursor sequence

Structure

        10            20        30        40        50        60 
CUCCUCCUCCAUCCUGC----|   U  A              U            CUUUGCAA 
                     UGUC CC UGGCGACCGUGGCU UAGAUUGUUACU        \
                     ACGG GG AUUGCUGGUACCGA AUCUGACAAUGG        G
AAAUUGAAAGGACUACUGUGG^   -  -              C            UACCUCGA 
 120       110       100          90        80        70

Deep sequencing

Go to detailed chart

Comment

There are apparent multiple Dicer cuts on the 5p arm.

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-132-P1b_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

Get sequence

Mature sequence

Tni-Mir-132-P1b_3p

mirBase accession

None

Sequence

41- UAACAGUCUACAGCCAUGGUCG -63

Get sequence