MirGeneDB ID | Tni-Mir-132-P2b |
Family name |
MIR-132 (all species) |
Seed |
CCUUGGC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-132-P1a
Tni-Mir-132-P1b
Tni-Mir-132-P2a
|
Orthologues |
Aca-Mir-132-P2
Ami-Mir-132-P2
Bta-Mir-132-P2
Cfa-Mir-132-P2
Cja-Mir-132-P2
Cmi-Mir-132-P2
Cpi-Mir-132-P2
Cpo-Mir-132-P2
Dno-Mir-132-P2
Dre-Mir-132-P2b
Eca-Mir-132-P2
Gga-Mir-132-P2
Gja-Mir-132-P2
Gmo-Mir-132-P2b
Hsa-Mir-132-P2
Laf-Mir-132-P2
Lch-Mir-132-P2
Loc-Mir-132-P2
Mal-Mir-132-P2b
Mdo-Mir-132-P2
Mml-Mir-132-P2
Mmr-Mir-132-P2
Mmu-Mir-132-P2
Mun-Mir-132-P2
Neu-Mir-132-P2
Oan-Mir-132-P2
Ocu-Mir-132-P2
Pab-Mir-132-P2
Pbv-Mir-132-P2
Pma-Mir-132-o2
Rno-Mir-132-P2
Sha-Mir-132-P2
Spt-Mir-132-P2
Tgu-Mir-132-P2
Xtr-Mir-132-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
7: 7924699-7924767 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGUCCUCCUACACUGGCCAGAGCAUCAGCACCUUGGCUUUAGACUGCUUACUGUUUAUACAGUAUCACAGUACAGUAACAGUCUACAGUCAUGGCUACCGACGCCUGGUAAUACAUCAACCACCAAGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGUCCUCCUACACUGG--- A A ---| ACCU U C GUUUAUACAG
CCAG GC UC AGC UGGCU UAGACUG UUACU \
GGUC CG AG UCG ACUGA AUCUGAC AAUGA U
CGAACCACCAACUACAUAAU - C CCA^ GU-- C - CAUGACACUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-132-P2b_5p |
mirBase accession | None |
Sequence |
0- ACCUUGGCUUUAGACUGCUUACU -23
Get sequence
|
Co-mature sequence |
Tni-Mir-132-P2b_3p |
mirBase accession | None |
Sequence |
46- UAACAGUCUACAGUCAUGGCUAC -69
Get sequence
|