Mir-132-P1

MirGeneDB ID

Pab-Mir-132-P1

Family name

MIR-132 (all species)

Seed

AACAGUC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-132-P2

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Dre-Mir-132-P1a Dre-Mir-132-P1b Ebu-Mir-132-P1e Ebu-Mir-132-P1f Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Gmo-Mir-132-P1a Gmo-Mir-132-P1b Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mal-Mir-132-P1a Mal-Mir-132-P1b Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Tni-Mir-132-P1a Tni-Mir-132-P1b Xla-Mir-132-P1c Xla-Mir-132-P1d Xtr-Mir-132-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054698.2: 1852318-1852375 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCGCGCCCCGCCCCCGCGUCUCCAGGGCAACCGUGGCUUUCGAUUGUUACUGUGGGAACUGGAGGUAACAGUCUACAGCCAUGGUCGCCCCGCAGCACGCCCACGCGCCGCGCCACG

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Structure

        10         20         30        40        50        
CGCGCGCCCCGCCCCCG-   -| CCA    A         UUC          GUGGG 
                  CGU CU   GGGC ACCGUGGCU   GAUUGUUACU     A
                  GCA GA   CCCG UGGUACCGA   CUGACAAUGG     A
GCACCGCGCCGCGCACCC   C^ CGC    C         CAU          AGGUC 
      110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-132-P1_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUCGAUUGUUACU -22

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Mature sequence

Pab-Mir-132-P1_3p

mirBase accession

None

Sequence

36- UAACAGUCUACAGCCAUGGUCG -58

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