Mir-132-P1e

MirGeneDB ID

Ebu-Mir-132-P1e

Family name

MIR-132 (all species)

Seed

AACAGUC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-132-P1f

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Xtr-Mir-132-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Vertebrata

Genome context
(Eburgeri_3)

FYBX02010190.1: 7403080-7403142 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAGUGCCAACAGCCCUUGGGGUCAUGGUACCCGUGGCUAUAGACUGUUACUGCACUAUAUAGUUGUCAGGUAACAGUCUACAGCCAUGGUUGCUAUGGCAACUAUACCUGCAGCUUGGACCG

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Structure

        10        20          30        40        50        60 
CAAGUGCCAACAGCCCUUGGG--|        C        A            GCACUAUA 
                       GUCAUGGUA CCGUGGCU UAGACUGUUACU        \
                       CGGUAUCGU GGUACCGA AUCUGACAAUGG        U
GCCAGGUUCGACGUCCAUAUCAA^        U        C            ACUGUUGA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ebu-Mir-132-P1e_5p*

mirBase accession

None

Sequence

0- CCCGUGGCUAUAGACUGUUACU -22

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Mature sequence

Ebu-Mir-132-P1e_3p

mirBase accession

None

Sequence

41- UAACAGUCUACAGCCAUGGUUG -63

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