MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-132-P1

Family name MIR-132 (all species)
Seed AACAGUC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-132-P2 
Orthologues Aca-Mir-132-P1  Ami-Mir-132-P1  Bta-Mir-132-P1  Cfa-Mir-132-P1  Cja-Mir-132-P1  Cmi-Mir-132-P1  Cpi-Mir-132-P1  Cpo-Mir-132-P1  Dno-Mir-132-P1  Dre-Mir-132-P1a  Dre-Mir-132-P1b  Ebu-Mir-132-P1e  Ebu-Mir-132-P1f  Eca-Mir-132-P1  Ete-Mir-132-P1  Gga-Mir-132-P1  Gja-Mir-132-P1  Gmo-Mir-132-P1a  Gmo-Mir-132-P1b  Hsa-Mir-132-P1  Laf-Mir-132-P1  Loc-Mir-132-P1  Mal-Mir-132-P1a  Mal-Mir-132-P1b  Mdo-Mir-132-P1  Mml-Mir-132-P1  Mmr-Mir-132-P1  Mmu-Mir-132-P1  Mun-Mir-132-P1  Neu-Mir-132-P1  Oan-Mir-132-P1  Ocu-Mir-132-P1  Pab-Mir-132-P1  Pbv-Mir-132-P1  Pma-Mir-132-o1  Rno-Mir-132-P1  Sha-Mir-132-P1  Spt-Mir-132-P1  Sto-Mir-132-P1  Tgu-Mir-132-P1  Tni-Mir-132-P1a  Tni-Mir-132-P1b  Xla-Mir-132-P1c  Xla-Mir-132-P1d  Xtr-Mir-132-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128089.1: 385834-385892 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAACCAGAGCUACCCUGGUCUCCGAGGCAACCGUGGCUUUAGAUUGUUACUGUAUGUAUGCAGUGGUAACAGUCUACAGCCAUGGUCGUUCGGGUAAGACGCACUCUGCAAACUCCAC
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Structure
        10        20           30        40        50         
GCAACCAGAGCUACCCUG    ---|    G A         U            GUAUGU 
                  GUCU   CCGAG C ACCGUGGCU UAGAUUGUUACU      \
                  CAGA   GGCUU G UGGUACCGA AUCUGACAAUGG      A
CACCUCAAACGUCUCACG    AUG^    - C         C            UGACGU 
       110       100        90         80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Lch-Mir-132-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCGUGGCUUUAGAUUGUUACU -22
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Mature sequence

Lch-Mir-132-P1_3p (predicted)

mirBase accessionNone
Sequence
37- UAACAGUCUACAGCCAUGGUCG -59
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