Mir-132-P1c

MirGeneDB ID

Xla-Mir-132-P1c

Family name

MIR-132 (all species)

Seed

AACAGUC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-132-P1d Xla-Mir-132-P2c Xla-Mir-132-P2d

Orthologues

Aca-Mir-132-P1 Ami-Mir-132-P1 Bta-Mir-132-P1 Cfa-Mir-132-P1 Cja-Mir-132-P1 Cmi-Mir-132-P1 Cpi-Mir-132-P1 Cpo-Mir-132-P1 Dno-Mir-132-P1 Eca-Mir-132-P1 Ete-Mir-132-P1 Gga-Mir-132-P1 Gja-Mir-132-P1 Hsa-Mir-132-P1 Laf-Mir-132-P1 Lch-Mir-132-P1 Loc-Mir-132-P1 Mdo-Mir-132-P1 Mml-Mir-132-P1 Mmr-Mir-132-P1 Mmu-Mir-132-P1 Mun-Mir-132-P1 Neu-Mir-132-P1 Oan-Mir-132-P1 Ocu-Mir-132-P1 Pab-Mir-132-P1 Pbv-Mir-132-P1 Pma-Mir-132-o1 Rno-Mir-132-P1 Sha-Mir-132-P1 Spt-Mir-132-P1 Sto-Mir-132-P1 Tgu-Mir-132-P1 Xtr-Mir-132-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 34151497-34151555 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCACCACUAUCAACUGUCUCCAGGGCAACCGUGGCUUUAGAUUGUUACUGUAGAUCUACAUUGGUAACAGUCUACAGCCAUGGUCGCUCGGGCAAGAUGCAGUCAGCGUGGUUGAU

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Structure

        10        20          30        40        50         
CUGCCACCACUAUCAACU    --| A    A         U            GUAGAU 
                  GUCU  CC GGGC ACCGUGGCU UAGAUUGUUACU      \
                  UAGA  GG CUCG UGGUACCGA AUCUGACAAUGG      C
UAGUUGGUGCGACUGACG    AC^ G    C         C            UUACAU 
       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-132-P1c_5p*

mirBase accession

None

Sequence

0- ACCGUGGCUUUAGAUUGUUACU -22

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Mature sequence

Xla-Mir-132-P1c_3p

mirBase accession

None

Sequence

37- UAACAGUCUACAGCCAUGGUCG -59

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