MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-132-o1

Family name MIR-132 (all species)
Seed AACAGUC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-132-o2  Pma-Mir-132-o3 
Orthologues Aca-Mir-132-P1  Ami-Mir-132-P1  Bta-Mir-132-P1  Cfa-Mir-132-P1  Cmi-Mir-132-P1  Cpi-Mir-132-P1  Cpo-Mir-132-P1  Dno-Mir-132-P1  Dre-Mir-132-P1a  Dre-Mir-132-P1b  Ebu-Mir-132-P1e  Ebu-Mir-132-P1f  Ete-Mir-132-P1  Gga-Mir-132-P1  Gja-Mir-132-P1  Gmo-Mir-132-P1a  Gmo-Mir-132-P1b  Hsa-Mir-132-P1  Lch-Mir-132-P1  Loc-Mir-132-P1  Mal-Mir-132-P1a  Mal-Mir-132-P1b  Mdo-Mir-132-P1  Mml-Mir-132-P1  Mmu-Mir-132-P1  Mun-Mir-132-P1  Oan-Mir-132-P1  Ocu-Mir-132-P1  Pbv-Mir-132-P1  Rno-Mir-132-P1  Sha-Mir-132-P1  Spt-Mir-132-P1  Sto-Mir-132-P1  Tgu-Mir-132-P1  Tni-Mir-132-P1a  Tni-Mir-132-P1b  Xla-Mir-132-P1c  Xla-Mir-132-P1d  Xtr-Mir-132-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NW_022638381.1: 3829-3892 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACACCCACAGCCUCGCCGUUGCCAUGGUAACCGUGGCUUUAGAUUGUUACUGUUGCCAUGGCGAUCUCCAGUAACAGUCUACAGCCAUGGUUGCCAAGGGCGGCCCUAGCAACGCGAAGAAAU
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Structure
        10         20         30        40        50        60 
CACACCCACAGCCUCGCC-      A-|             U            GUUGCCAU 
                   GUUGCC  UGGUAACCGUGGCU UAGAUUGUUACU        G
                   CGGCGG  ACCGUUGGUACCGA AUCUGACAAUGA        G
UAAAGAAGCGCAACGAUCC      GA^             C            CCUCUAGC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-132-o1_5p*

mirBase accessionNone
Sequence
0- ACCGUGGCUUUAGAUUGUUACU -22
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Mature sequence

Pma-Mir-132-o1_3p

mirBase accessionNone
Sequence
42- UAACAGUCUACAGCCAUGGUUG -64
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