MirGeneDB ID | Cmi-Mir-132-P1 |
Family name |
MIR-132 (all species) |
Seed |
AACAGUC |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-132-P2
|
Orthologues |
Aca-Mir-132-P1
Ami-Mir-132-P1
Bta-Mir-132-P1
Cfa-Mir-132-P1
Cja-Mir-132-P1
Cpi-Mir-132-P1
Cpo-Mir-132-P1
Dno-Mir-132-P1
Dre-Mir-132-P1a
Dre-Mir-132-P1b
Ebu-Mir-132-P1e
Ebu-Mir-132-P1f
Eca-Mir-132-P1
Ete-Mir-132-P1
Gga-Mir-132-P1
Gja-Mir-132-P1
Gmo-Mir-132-P1a
Gmo-Mir-132-P1b
Hsa-Mir-132-P1
Laf-Mir-132-P1
Lch-Mir-132-P1
Loc-Mir-132-P1
Mal-Mir-132-P1a
Mal-Mir-132-P1b
Mdo-Mir-132-P1
Mml-Mir-132-P1
Mmr-Mir-132-P1
Mmu-Mir-132-P1
Mun-Mir-132-P1
Neu-Mir-132-P1
Oan-Mir-132-P1
Ocu-Mir-132-P1
Pab-Mir-132-P1
Pbv-Mir-132-P1
Pma-Mir-132-o1
Rno-Mir-132-P1
Sha-Mir-132-P1
Spt-Mir-132-P1
Sto-Mir-132-P1
Tgu-Mir-132-P1
Tni-Mir-132-P1a
Tni-Mir-132-P1b
Xla-Mir-132-P1c
Xla-Mir-132-P1d
Xtr-Mir-132-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635901.1: 1951348-1951406 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACAGCCCAUCUCCGCCUGGUUCCAUGGUGACCGUGGCUUUCGAUUGUUAUUGUCAGUGUGGUGUAGUAACAGUCUACAGCCAUGGUUGUUUGGACAGGAAGCAACCUGCCGCGACUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UACAGCCCAUCUCCGCCUGGU---| U UG UUC GUCAGU
UCCA GG ACCGUGGCU GAUUGUUAUU \
AGGU UU UGGUACCGA CUGACAAUGA G
CCUCAGCGCCGUCCAACGAAGGAC^ - GU CAU UGUGGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-132-P1_5p* |
mirBase accession | None |
Sequence |
0- ACCGUGGCUUUCGAUUGUUAUU -22
Get sequence
|
Mature sequence |
Cmi-Mir-132-P1_3p |
mirBase accession | None |
Sequence |
37- UAACAGUCUACAGCCAUGGUUG -59
Get sequence
|