MirGeneDB ID | Mal-Mir-132-P2a |
Family name |
MIR-132 (all species) |
Seed |
AACAGUC |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-132-P1a
Mal-Mir-132-P1b
Mal-Mir-132-P2b
|
Orthologues |
Aca-Mir-132-P2
Ami-Mir-132-P2
Bta-Mir-132-P2
Cfa-Mir-132-P2
Cja-Mir-132-P2
Cmi-Mir-132-P2
Cpi-Mir-132-P2
Cpo-Mir-132-P2
Dno-Mir-132-P2
Dre-Mir-132-P2a
Eca-Mir-132-P2
Gga-Mir-132-P2
Gja-Mir-132-P2
Gmo-Mir-132-P2a
Hsa-Mir-132-P2
Laf-Mir-132-P2
Lch-Mir-132-P2
Loc-Mir-132-P2
Mdo-Mir-132-P2
Mml-Mir-132-P2
Mmr-Mir-132-P2
Mmu-Mir-132-P2
Mun-Mir-132-P2
Neu-Mir-132-P2
Oan-Mir-132-P2
Ocu-Mir-132-P2
Pab-Mir-132-P2
Pbv-Mir-132-P2
Pma-Mir-132-o2
Rno-Mir-132-P2
Sha-Mir-132-P2
Spt-Mir-132-P2
Tgu-Mir-132-P2
Tni-Mir-132-P2a
Xtr-Mir-132-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884840.1: 364461-364528 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUCUGUUCUGUCAGUCAGUGCAUCAAUACCUUGGCUCUAGACUGCUUACUGCUAAAAGUCCCCCAAAGUACAGUAACAGUCUACAGUCAUGGCUACUGACGUCUGGCAAACCUCUGCUCUGUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGCUCUGUUCUGUCAG--| U A A - U C C GCUAAAAGUC
UCAG GC UCA UA CC UGGCU UAGACUG UUACU \
GGUC UG AGU AU GG ACUGA AUCUGAC AAUGA C
GUGUGUCUCGUCUCCAAAC^ - C C C U C - CAUGAAACCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha site +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mal-Mir-132-P2a_5p* |
mirBase accession | None |
Sequence |
0- ACCUUGGCUCUAGACUGCUUACU -23
Get sequence
|
Mature sequence |
Mal-Mir-132-P2a_3p |
mirBase accession | None |
Sequence |
46- UAACAGUCUACAGUCAUGGCUA -68
Get sequence
|