Mir-208-P3a3-v1

MirGeneDB ID

Pma-Mir-208-P3a3-v1

Family name

MIR-208 (all species)

Seed

UAAGACG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-208

Paralogues

Pma-Mir-208-P3a1-v1 Pma-Mir-208-P3a1-v2 Pma-Mir-208-P3a2-v1 Pma-Mir-208-P3a2-v2 Pma-Mir-208-P3a3-v2 Pma-Mir-208-P3b

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046131.1: 4412220-4412281 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-208-P3a3-v1)

Mir-208-P3a1-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a1-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a2-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v1 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl
Mir-208-P3a3-v2 NC_046131.1: 4412220-4412281 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGACUCCCGCUGGGAAGUGGCGCACGGGCGUGCUCCUCGCUCGUUUUAUUUUGGAAUCAAAAGUUAAAGAUAAGACGAGCAAGUAGUGGGUCCGAGCGCCGCGCGCACACAAGCUCCUCCG

Get precursor sequence

Structure

        10          20        30        40        50        60
ACGACUCCCGCUGGGAA--|      A     G    C  C             UGGAAUC 
                   GUGGCGC CGGGC UGCU CU GCUCGUUUUAUUU       A
                   CGCCGCG GCCUG GUGA GA CGAGCAGAAUAGA       A
GCCUCCUCGAACACACGCG^      A     G    U  A             AAUUGAA 
120       110       100        90        80        70