| MirGeneDB ID | Pma-Mir-338-P3 |
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| Family name |
MIR-338 (all species) |
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| Seed |
CCAGUGU |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-338b
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| Paralogues |
Pma-Mir-338-o3
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| Orthologues |
Ebu-Mir-338-P3
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| Node of Origin (locus) |
Cyclostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046071.1: 19740631-19740695 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGACGCCGUCGGAUUGGCAGUGGCAGUGGGAACAAAUCACAGUGACUGCAGAGUCGGAGAUGUGGACAGAACUCCAGUGUCUGUGAUUUCGUUCUCCACUCUGCUCGCCCAAACAUCCUCCCACC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGACGCCGUCGGAUUGGC-- UG C - -| UG CA CGGAGAU
AG G AGUGG GAAC AAAUCACAG ACUG GAGU G
UC C UCACC CUUG UUUAGUGUC UGAC CUCA U
CCACCCUCCUACAAACCCGC GU - U C^ UG -- AGACAGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Star sequence |
Pma-Mir-338-P3_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AACAAAUCACAGUGACUGCAGAGU -24
Get sequence
|
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| Mature sequence |
Pma-Mir-338-P3_3p |
| mirBase accession | MIMAT0019540 |
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| Sequence |
42- UCCAGUGUCUGUGAUUUCGUUCU -65
Get sequence
|
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