MirGeneDB 3.0
MirGeneDB ID

Pmi-Mir-133-P9a

Family name MIR-133 (all species)
Seed UUGGUCC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-133
Paralogues Pmi-Mir-133-P9b 
Orthologues Aae-Mir-133  Aga-Mir-133  Asu-Mir-133  Bge-Mir-133  Cbr-Mir-133  Cel-Mir-133  Cin-Mir-133  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dpu-Mir-133  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Mgi-Mir-133  Mom-Mir-133  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pau-Mir-133  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pve-Mir-133  Rph-Mir-133  Sma-Mir-133  Snu-Mir-133  Spu-Mir-133  Tca-Mir-133  Tur-Mir-133  War-Mir-133  Xbo-Mir-133 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)		 JH774055.1: 26185-26245 [+]
Clustered miRNAs
(< 50kb from Mir-133-P9a)		 Mir-133-P9a JH774055.1: 26185-26245 [+]
Mir-133-P9b JH774055.1: 26185-26245 [+]
Precursor
(pre-Mir +30nt flank)
UCAUGGGUUUUCAUCAUUUUACUGCGCUUUAGCUGGUAAACGGGAACCAAAUCGUGGCCUUGUGUGGAUUUGGUCCCCUUCAACCAGCCGUAGCACAGCAUUCUUGCAACUGGGACGCAUC
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Structure
        10        20          30        40        50          
UCAUGGGUUUUCAUCAUUUUA--|  C   UUA      AAAC   A        GUGGCC 
                       CUG GCU   GCUGGU    GGG ACCAAAUC      \
                       GAC CGA   CGACCA    CCC UGGUUUAG      U
CUACGCAGGGUCAACGUUCUUAC^  A   UGC      ACUU   C        GUGUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
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Star sequence

Pmi-Mir-133-P9a_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGCUGGUAAACGGGAACCAAAUC -23
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Mature sequence

Pmi-Mir-133-P9a_3p (predicted)
mirBase accessionMIMAT0032159
Sequence 
38- UUUGGUCCCCUUCAACCAGCCGU -61
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