| MirGeneDB ID | Pmi-Mir-2006 |
|---|
| Family name |
MIR-2006 (all species) |
|---|
| Seed |
AGCACAC |
|---|
| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
pmi-mir-2006
|
|---|
| Paralogues |
|
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| Orthologues |
Pfl-Mir-2006
Sko-Mir-2006
Spu-Mir-2006
|
|---|
| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
|---|
Genome context
(Pmin1) |
JH777652.1: 43603-43663 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUCACGGCCUAUAGCACGUGACAUGUGACAUCGCCACCAGGUGUACUUCAGUUAAAUACCAAAAUCUGAGCACACUUGGUAGCGGUGCCUUAAGUCAUUACAUUACAUCAGGGAUAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAUCACGGCCUAUAGCAC--| A UGA C A U UUAAAU
GUGAC UG CAUCGC ACCAGGUGU CU CAG A
UACUG AU GUGGCG UGGUUCACA GA GUC C
UGUAUAGGGACUACAUUACAU^ A UCC A C - UAAAAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Pmi-Mir-2006_5p* |
| mirBase accession | MIMAT0032179 |
|---|
| Sequence |
0- CAUCGCCACCAGGUGUACUUCAG -23
Get sequence
|
|---|
| Mature sequence |
Pmi-Mir-2006_3p |
| mirBase accession | MIMAT0032180 |
|---|
| Sequence |
39- GAGCACACUUGGUAGCGGUGCC -61
Get sequence
|
|---|
