| MirGeneDB ID | Sko-Mir-2006 |
|---|
| Family name |
MIR-2006 (all species) |
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| Seed |
AUCGCUA |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-2006
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2006
Pmi-Mir-2006
Spu-Mir-2006
|
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| Node of Origin (locus) |
Ambulacraria
|
|---|
| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Skow_1.1) |
NW_003115458.1: 124730-124786 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAGGAAUGGAAUUGAAUGCAUGUGCGGUAUCAUCGCUAUCGUGUGUUCUUGUGUGUCUGUACAACAAGCACACUACAUAGCGGUGCUUCCACGCACGUAAAUCUACACCGCUCAUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGGAAUGGAAUUGAAUGC GUAU--| C - U GUGUC
AUGUGCG CAUCGCUAU GU GUGU CUUGU \
UGCACGC GUGGCGAUA CA CACA GAACA U
CAUACUCGCCACAUCUAAA ACCUUC^ - U C ACAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
|---|
| Mature sequence |
Sko-Mir-2006_5p |
| mirBase accession | MIMAT0020047 |
|---|
| Sequence |
0- CAUCGCUAUCGUGUGUUCUUGU -22
Get sequence
|
|---|
| Co-mature sequence |
Sko-Mir-2006_3p |
| mirBase accession | MIMAT0020048 |
|---|
| Sequence |
35- AAGCACACUACAUAGCGGUGCU -57
Get sequence
|
|---|
