MirGeneDB ID | Pfl-Mir-2006 |
Family name |
MIR-2006 (all species) |
Seed |
AGCACAC |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Pmi-Mir-2006
Sko-Mir-2006
Spu-Mir-2006
|
Node of Origin (locus) |
Ambulacraria
|
Node of Origin (family) |
Ambulacraria
|
Genome context (Pfl) |
LD527063.1: 34000-34058 [-]
|
Precursor (pre-Mir +30nt flank) |
GUUCAGGAAUUCUUCUAUGCAAAUGAGCAACAUCGCUAUAAAGUGUUCUUAUUAUGUAAUAAUUCAUAAGCACACUACAUAGCGGUGCUACUCGUUGUAAUCAAUCGACGAUCCGUGAG
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|
Structure | 10 20 30 40 50
GUUCAGGAAUUCUUCUA---| A CAA AA U UAUGUA
UGCAA UGAG CAUCGCUAU AGUGU CUUAU \
AUGUU GCUC GUGGCGAUA UCACA GAAUA A
GAGUGCCUAGCAGCUAACUA^ - AUC CA C CUUAAU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pfl-Mir-2006_5p* |
mirBase accession | None |
Sequence |
0- CAUCGCUAUAAAGUGUUCUUAU -22
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|
Mature sequence |
Pfl-Mir-2006_3p |
mirBase accession | None |
Sequence |
37- AAGCACACUACAUAGCGGUGCU -59
Get sequence
|