| MirGeneDB ID | Pmi-Mir-2007 |
|---|
| Family name |
MIR-2007 (all species) |
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| Seed |
AUUUCAG |
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| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
pmi-mir-2007
|
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| Paralogues |
|
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| Orthologues |
Pfl-Mir-2007
Sko-Mir-2007
Spu-Mir-2007
|
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| Node of Origin (locus) |
Ambulacraria
|
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| Node of Origin (family) |
Ambulacraria
|
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Genome context
(Pmin1) |
JH771167.1: 3247-3310 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CCAUCUUGAAUCGCCAUGGCAGCGCUGCUGUAUUUCAGGCGGUAUACUGGUAACAGCUUAUAUGCAGAGUUUACCAGUUACUUCUUGGAAUAUAGGGACGCUUGUCUUAACGCAUCGUUGGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAUCUUGAAUCGCCAU- - -| G C U CAGCUUAU
GGC AGCG CU CUGUAUUUCAGG GGUA ACUGGUAA \
CUG UCGC GG GAUAUAAGGUUC UCAU UGACCAUU A
CAAGGUUGCUACGCAAUU U A^ - U - UGAGACGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Pmi-Mir-2007_5p |
| mirBase accession | MIMAT0032181 |
|---|
| Sequence |
0- UAUUUCAGGCGGUAUACUGGUAA -23
Get sequence
|
|---|
| Star sequence |
Pmi-Mir-2007_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- ACCAGUUACUUCUUGGAAUAUA -64
Get sequence
|
|---|
